> For the complete documentation index, see [llms.txt](https://knowledge.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://knowledge.illumina.com/whats_new.md).

# What's New

Articles published to Illumina Knowledge in the past 2 months:

* [0.8X bead cleanup to remove adapter dimers from Illumina Single Cell 3’ RNA Prep libraries](/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009534.md) (*July 17, 2026*)
* [Adapter trimming Why are adapter sequences trimmed from only the 3' ends of reads](/software/general-library-prep/software-general-library-prep-reference_material-list/000002905.md) (*July 17, 2026*)
* [Allowed characters for Run Names and Sample IDs in Local Run Manager v3](/software/miseq-ruo/software-miseq-ruo-reference_material-list/000005750.md) (*July 17, 2026*)
* [AmpliSeq Antimicrobial Resistance Research Panel product, support, and manifest page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005186.md) (*July 17, 2026*)
* [AmpliSeq Inborn Errors of Metabolism Research Panel v2 product, support, and manifest page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005198.md) (*July 17, 2026*)
* [AmpliSeq On Demand Panel Product and Support Pages](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005535.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Autism Research Panel product page, support page, and manifest links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005187.md) (*July 17, 2026*)
* [AmpliSeq for Illumina BRCA Panel product page and support page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005521.md) (*July 17, 2026*)
* [AmpliSeq for Illumina BRCA Plus, Extended Hereditary Breast and Ovarian Research Panel page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005188.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Cancer Hotspot v2 Panel product page and support page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005522.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Cardiovascular Research Panel product page, support page, and manifest links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005189.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Childhood Cancer Panel product page and support page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005523.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Colon and Lung Research Panel v2 product, support, and manifest page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005190.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Comprehensive Panel v3 product page and support page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005524.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Custom DNA Panels product and support page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005533.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Custom RNA Panels product and support page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005534.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Deafness Research Panel v2 product page, support page, and manifest links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005185.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Dementia Research Gene Panel product page, support page, and manifest links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005191.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Dysmorphia Dysplasia Research Panel v2 product, support, & manifest page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005193.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Ebola Research Panel product page, support page, and manifest links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005194.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Focus Panel product page and support page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005526.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Gastrointestinal Research Panel v2 product, support, and manifest page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005195.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Hearing Loss Research Panel v1 product page, support page, and manifest links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005196.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Hematology Research Panel product page, support page, and manifest links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005197.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Immune Repertoire Panel Plus, TCR beta Panel product and support page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005527.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Immune Response Panel product page and support page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005528.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Inherited Cancer Research Panel product page, support page, and manifest links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005199.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Introduction Support Webinar Video](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000008039.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Library Prep, Indexes, and Accessories product page and support page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005532.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Long Non Coding RNA Research Panel product, support, and manifest page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005200.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Myeloid Panel product page and support page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005529.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Neurological Research Panel product page, support page, and manifest links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005201.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Noonan Research Panel product page, support page, and manifest links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005202.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Ophthalmic Research Panel product page, support page, and manifest links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005203.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Primary Immune Deficiency Research Panel v2 page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005204.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Pulmonary Research Panel v2 product page, support page, and manifest links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005205.md) (*July 17, 2026*)
* [AmpliSeq for Illumina RNA Fusion Lung Cancer Research Panel product, support, & manifest page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005206.md) (*July 17, 2026*)
* [AmpliSeq for Illumina RNA Inflammation Response Research Panel product, support, & manifest page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005207.md) (*July 17, 2026*)
* [AmpliSeq for Illumina RNA MAPK Pathway Research Panel product page, support page, and manifest links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005208.md) (*July 17, 2026*)
* [AmpliSeq for Illumina RNA Stem Cell Research Panel product page, support page, and manifest links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005209.md) (*July 17, 2026*)
* [AmpliSeq for Illumina RNA WNT Signaling Pathway Research Panel page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005210.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Renal Research Panel v2 product page, support page, and manifest links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005211.md) (*July 17, 2026*)
* [AmpliSeq for Illumina SARS CoV 2 Research Panel product page, support page, and manifest links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005212.md) (*July 17, 2026*)
* [AmpliSeq for Illumina TB Research Panel product page, support page, and manifest links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005213.md) (*July 17, 2026*)
* [AmpliSeq for Illumina TCR beta SR Panel product page and support page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005530.md) (*July 17, 2026*)
* [AmpliSeq for Illumina Transcriptome Panel product page and support page links](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-reference_material-list/000005531.md) (*July 17, 2026*)
* [Analysis options FAQ for Illumina Rapid RNA Kits](/software/dragen/software-dragen-faq-list/000010217.md) (*July 17, 2026*)
* [Assessing cDNA QC in Illumina Single Cell 3' RNA Prep](/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009524.md) (*July 17, 2026*)
* [Assessing library QC in Illumina Single Cell 3' RNA Prep](/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009527.md) (*July 17, 2026*)
* [Bead clean up ratios used in the Illumina 16S Metagenomic Sequencing Library Preparation protocol](/library-preparation/custom-third-party-library-prep/library-preparation-custom-third-party-library-prep-faq-list/000006127.md) (*July 17, 2026*)
* [Bead types in Illumina library preparation kits](/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000003342.md) (*July 17, 2026*)
* [Best Practices for Nuclei Isolation with alternative isolation protocols for Illumina Single Cell](/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009451.md) (*July 17, 2026*)
* [Best practices for cell preparation for Illumina Single Cell 3' RNA prep](/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009437.md) (*July 17, 2026*)
* [Best practices for maintaining the computer on a MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000006708.md) (*July 17, 2026*)
* [Best practices for pipette mixing PIPs and cells/nuclei in Illumina Single Cell 3' RNA Prep](/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009709.md) (*July 17, 2026*)
* [Best practices for using Illumina Single Cell Nuclei Isolation Kits for Illumina Single Cell kits](/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009450.md) (*July 17, 2026*)
* [Can Illumina RNA Prep with Enrichment library prep and enrichment reagents be purchased separately?](/library-preparation/rna-enrichment-based-library-prep/library-preparation-rna-enrichment-based-library-prep-faq-list/000006623.md) (*July 17, 2026*)
* [Can MiSeq Reagents be stored at 80°C rather than 20°C?](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000008114.md) (*July 17, 2026*)
* [Can PhiX and denatured PhiX be stored and used again?](/library-preparation/accessory-products/library-preparation-accessory-products-faq-list/000005128.md) (*July 17, 2026*)
* [Can Sequencing Analysis Viewer (SAV) be used with the MiSeq System to view primary analysis results?](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000002601.md) (*July 17, 2026*)
* [Can a MiSeq post run wash be performed every week instead of entering standby mode?](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000006976.md) (*July 17, 2026*)
* [Can a MiSeq v2 flow cell be used for sequencing with a MiSeq v3 reagent cartridge?](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000002317.md) (*July 17, 2026*)
* [Can an entire index be N padded in Miseq Reporter?](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000003624.md) (*July 17, 2026*)
* [Can an expired reagent cartridge be used for a MiSeq run?](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000002254.md) (*July 17, 2026*)
* [Can library preparation reagents be stored in a frost free freezer?](/library-preparation/general-library-prep/library-preparation-general-library-prep-faq-list/000005798.md) (*July 17, 2026*)
* [Can vortexing damage cells/nuclei when generating emulsions in the Illumina Single Cell workflow?](/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-faq-list/000009458.md) (*July 17, 2026*)
* [Can wells in index plates be used more than once?](/library-preparation/index-kits/library-preparation-index-kits-faq-list/000005240.md) (*July 17, 2026*)
* [Capture and wash best practices for Illumina RNA Prep with Enrichment (L) Tagmentation](/library-preparation/rna-enrichment-based-library-prep/library-preparation-rna-enrichment-based-library-prep-reference_material-list/000003311.md) (*July 17, 2026*)
* [Cell input and volume loading recommendations for Illumina Single Cell 3' RNA Prep](/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009473.md) (*July 17, 2026*)
* [Chemistry and Imaging on NovaSeq 6000](/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000008435.md) (*July 17, 2026*)
* [Chemistry and imaging on MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000003757.md) (*July 17, 2026*)
* [Cleaning agents specifications and applications for Tecan (LiHa and RoMa) parts](/microarray/tecan-iaps/microarray-tecan-iaps-faq-list/000007003.md) (*July 17, 2026*)
* [Considerations when migrating non Illumina libraries between sequencing platforms](/library-preparation/custom-third-party-library-prep/library-preparation-custom-third-party-library-prep-reference_material-list/000001478.md) (*July 17, 2026*)
* [Converting ng/µl to nM when calculating dsDNA library concentration](/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000001240.md) (*July 17, 2026*)
* [Custom sequencing primers on the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000002414.md) (*July 17, 2026*)
* [DNA Input Guidelines for Infinium MethylationEPIC Arrays](/microarray/non-human-methylation/microarray-non-human-methylation-reference_material-list/000002679.md) (*July 17, 2026*)
* [DRAGEN Analysis Pipelines FAQ for Illumina Rapid RNA Kits](/software/dragen/software-dragen-faq-list/000010218.md) (*July 17, 2026*)
* [DRAGEN Bio IT Platform v4 Oracle 8 upgrade instructions](/software/dragen-server/software-dragen-server-reference_material-list/000007439.md) (*July 17, 2026*)
* [Decode File Client Troubleshooting Guide](/microarray/decode-file-client-software/microarray-decode-file-client-software-troubleshooting-list/000001426.md) (*July 17, 2026*)
* [Denature and dilution FAQ for Illumina DNA PCR Free](/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003444.md) (*July 17, 2026*)
* [Do MiSeq Wash Tubes include an expiration date?](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000009678.md) (*July 17, 2026*)
* [Does MiSeq verify the number of cycles in a planned run against the cycles supported by the reagent kit?](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000003094.md) (*July 17, 2026*)
* [Double sided size selection and bead clean up](/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000006157.md) (*July 17, 2026*)
* [Enabling run storage and analysis in BaseSpace for MiSeq runs](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000003618.md) (*July 17, 2026*)
* [Enrichment probe design FAQ for Illumina Rapid RNA kits](/library-preparation/rna-enrichment-based-library-prep/library-preparation-rna-enrichment-based-library-prep-faq-list/000010211.md) (*July 17, 2026*)
* [Extending cDNA storage time in Illumina Single Cell 3' RNA Prep](/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009394.md) (*July 17, 2026*)
* [Freeze thaw stability and shelf life of TSO500 family automation library preparation kits](/library-preparation/trusight-oncology-tumor-library-prep/library-preparation-trusight-oncology-tumor-library-prep-reference_material-list/000003794.md) (*July 17, 2026*)
* [Freeze thaw stability of TruSight Oncology 500 (TSO500) ctDNA (v1 and v2) input and reagents](/library-preparation/trusight-oncology-tumor-library-prep/library-preparation-trusight-oncology-tumor-library-prep-reference_material-list/000002919.md) (*July 17, 2026*)
* [Frequently asked questions about upgrading to MiSeq Control Software v4.0](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000005752.md) (*July 17, 2026*)
* [Frequently asked questions for AmpliSeq for Illumina On Demand panels](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-faq-list/000001048.md) (*July 17, 2026*)
* [General information regarding RNA samples in the TruSight Oncology 500 (TSO500) v1 and v2 workflows](/library-preparation/trusight-oncology-tumor-library-prep/library-preparation-trusight-oncology-tumor-library-prep-reference_material-list/000003171.md) (*July 17, 2026*)
* [How Long Does the Flow Rate Check Take During the MiSeq Pre Run Checks?](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000009127.md) (*July 17, 2026*)
* [How many freeze thaw cycles can TruSight Tumor 15 (TST15) library preparation reagents undergo?](/library-preparation/trusight-oncology-tumor-library-prep/library-preparation-trusight-oncology-tumor-library-prep-faq-list/000008398.md) (*July 17, 2026*)
* [How many reactions are in the AmpliSeq Library Equalizer for Illumina?](/library-preparation/ampliseq-library-prep/library-preparation-ampliseq-library-prep-faq-list/000006521.md) (*July 17, 2026*)
* [How much template does the MiSeq System use?](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000002524.md) (*July 17, 2026*)
* [How to Check if a MiSeq Reagent Cartridge was pierced during a run](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000003497.md) (*July 17, 2026*)
* [How to Perform Washes on the MiSeq Video](/instrumentation/general/instrumentation-general-reference_material-list/000006958.md) (*July 17, 2026*)
* [How to access MiSeq Reporter](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000003627.md) (*July 17, 2026*)
* [How to access Windows on the MiSeq if there is black screen at boot up](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001658.md) (*July 17, 2026*)
* [How to add a custom library prep kit to Illumina Experiment Manager](/software/other-illumina-software/software-other-illumina-software-reference_material-list/000002346.md) (*July 17, 2026*)
* [How to add an Administrator account to Windows 10 Operating System on the NovaSeq 6000](/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000007867.md) (*July 17, 2026*)
* [How to change the date format in the GenomeStudio Final Report in the Processing Date Field](/microarray/human-genotyping/microarray-human-genotyping-reference_material-list/000005246.md) (*July 17, 2026*)
* [How to check Infinium samples for possible cross sample contamination in GenomeStudio](/microarray/human-genotyping/microarray-human-genotyping-troubleshooting-list/000002130.md) (*July 17, 2026*)
* [How to check network settings on the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000002383.md) (*July 17, 2026*)
* [How to clean the MiSeq flow cell holder](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000003500.md) (*July 17, 2026*)
* [How to demultiplex mixed libraries on the same lane in BaseSpace Sequence Hub](/software/basespace-sequence-hub/software-basespace-sequence-hub-troubleshooting-list/000002853.md) (*July 17, 2026*)
* [How to generate an RFID bypass code in MyIllumina Video](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000005859.md) (*July 17, 2026*)
* [How to install the BaseSpace Sequence Hub Downloader on Mac OS](/software/basespace-sequence-hub/software-basespace-sequence-hub-reference_material-list/000003049.md) (*July 17, 2026*)
* [How to mitigate index hopping](/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000001928.md) (*July 17, 2026*)
* [How to obtain Unmethylated and Methylated signal in GenomeStudio for each CpG in the Infinium MethylationEPIC Array](/microarray/non-human-methylation/microarray-non-human-methylation-troubleshooting-list/000006306.md) (*July 17, 2026*)
* [How to perform library heat denaturation (heat shock) before sequencing?](/library-preparation/general-library-prep/library-preparation-general-library-prep-faq-list/000005129.md) (*July 17, 2026*)
* [How to recover a BaseSpace password reset email](/software/basespace-sequence-hub/software-basespace-sequence-hub-troubleshooting-list/000003658.md) (*July 17, 2026*)
* [How to share BaseSpace sequencing runs and project data using 'Get Link' option](/software/basespace-sequence-hub/software-basespace-sequence-hub-reference_material-list/000001597.md) (*July 17, 2026*)
* [How to stop a MiSeq run](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000005081.md) (*July 17, 2026*)
* [How to troubleshoot Local Run Manager (LRM) analysis module not available at run start on NextSeq 500/550](/software/nextseq-500-550/software-nextseq-500-550-troubleshooting-list/000001904.md) (*July 17, 2026*)
* [How to unlock a Biosample in BaseSpace that is locked due to Biosample Data Aggregation](/software/basespace-sequence-hub/software-basespace-sequence-hub-reference_material-list/000003653.md) (*July 17, 2026*)
* [How to upload a run to BaseSpace using BaseSpace Command Line Interface (CLI)](/software/basespace-cli/software-basespace-cli-reference_material-list/000003298.md) (*July 17, 2026*)
* [How to use BeadArray Controls Reporter (BACR) to quickly analyze Infinium Methylation Array Control Data](/microarray/non-human-methylation/microarray-non-human-methylation-reference_material-list/000003398.md) (*July 17, 2026*)
* [Illumina RNA Prep with Enrichment, (L) Tagmentation General FAQs](/library-preparation/rna-enrichment-based-library-prep/library-preparation-rna-enrichment-based-library-prep-faq-list/000003103.md) (*July 17, 2026*)
* [Illumina RNA Prep with Enrichment, (L) Tagmentation Protocol FAQs](/library-preparation/rna-enrichment-based-library-prep/library-preparation-rna-enrichment-based-library-prep-faq-list/000003294.md) (*July 17, 2026*)
* [Illumina Single Cell 3' RNA Preparation library sequencing read length and loading concentrations](/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009449.md) (*July 17, 2026*)
* [Illumina Stranded mRNA Prep Ligation Protocol FAQs](/library-preparation/rna-library-prep/library-preparation-rna-library-prep-faq-list/000003290.md) (*July 17, 2026*)
* [Important file types for analysis of BeadArray data in BlueFuse Multi](/microarray/bluefuse-multi/microarray-bluefuse-multi-troubleshooting-list/000005043.md) (*July 17, 2026*)
* [Infinium HD Methylation assay workflow for fresh/frozen versus FFPE samples](/microarray/non-human-methylation/microarray-non-human-methylation-reference_material-list/000001566.md) (*July 17, 2026*)
* [Is it possible to pool different library types in the same sequencing run?](/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000003284.md) (*July 17, 2026*)
* [Labeled components of a v1 sample sheet](/software/bcl2fastq/software-bcl2fastq-reference_material-list/000002204.md) (*July 17, 2026*)
* [Library QC for the Illumina DNA Prep (M) Tagmentation Kit](/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000001258.md) (*July 17, 2026*)
* [Library quantification and quality control quick reference guide](/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000001247.md) (*July 17, 2026*)
* [Optimizing coverage for targeted resequencing](/library-preparation/dna-library-prep/library-preparation-dna-library-prep-reference_material-list/000001409.md) (*July 17, 2026*)
* [Plate layouts for IDT for Illumina DNA/RNA UD Index kits, Sets A, B, C, and D](/library-preparation/index-kits/library-preparation-index-kits-reference_material-list/000002338.md) (*July 17, 2026*)
* [Product page and support page links for Illumina DNA Prep with Exome 2.5 Enrichment](/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000007302.md) (*July 17, 2026*)
* [Recommendations for optimal cluster density and PhiX loading concentrations on the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000001676.md) (*July 17, 2026*)
* [Requirements for uploading FASTQ Files to BaseSpace via web interface](/software/basespace-sequence-hub/software-basespace-sequence-hub-troubleshooting-list/000001313.md) (*July 17, 2026*)
* [Sequencing and coverage recommendations for TruSight Oncology 500 (TSO500) ctDNA v2](/library-preparation/trusight-oncology-tumor-library-prep/library-preparation-trusight-oncology-tumor-library-prep-reference_material-list/000002931.md) (*July 17, 2026*)
* [Specifications for the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000001670.md) (*July 17, 2026*)
* [Tecan/IAPS with IAC Power Cycle Instructions](/microarray/tecan-iaps/microarray-tecan-iaps-reference_material-list/000002765.md) (*July 17, 2026*)
* [Transferring data between a personal account and a Professional workgroup in BaseSpace Sequence Hub](/software/basespace-sequence-hub/software-basespace-sequence-hub-reference_material-list/000001798.md) (*July 17, 2026*)
* [Troubleshooting "Access to the path 'Global\Local Run Manager' is denied" on MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000008538.md) (*July 17, 2026*)
* [Troubleshooting "Camera exception, error= 360: Failed to perform sBCa" error on the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000007301.md) (*July 17, 2026*)
* [Troubleshooting FPGA Timeout Errors on the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001444.md) (*July 17, 2026*)
* [Troubleshooting MiSeq Control Software (MCS) v4 stalling during initialization](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000005502.md) (*July 17, 2026*)
* [Troubleshooting Y Motor Errors on the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001452.md) (*July 17, 2026*)
* [Troubleshooting Z motor errors occurring mid run on the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001850.md) (*July 17, 2026*)
* [Troubleshooting a Focus Mirror Error on the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001449.md) (*July 17, 2026*)
* [Troubleshooting a MiSeq "Consecutive Camera Failure Limit has been Exceeded for this Run" error](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000005566.md) (*July 17, 2026*)
* [Troubleshooting a bubble in MiSeq flow cell](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001996.md) (*July 17, 2026*)
* [Troubleshooting best focus errors occurring mid run on the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001849.md) (*July 17, 2026*)
* [Troubleshooting cycle 1 errors on the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001430.md) (*July 17, 2026*)
* [Troubleshooting failed MiSeq system checks](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000007050.md) (*July 17, 2026*)
* [Troubleshooting low cluster density on the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001445.md) (*July 17, 2026*)
* [Troubleshooting mid run shutdowns or reboots on the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000002092.md) (*July 17, 2026*)
* [Turnaround time, throughput, and workflow requirements for COVIDSeq (RUO)](/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-faq-list/000005436.md) (*July 17, 2026*)
* [Understanding the differences between Illumina index chemistries and anchor function](/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000006561.md) (*July 17, 2026*)
* [Uploading Runs BaseSpace Command Line Interface (CLI) Video](/software/basespace-cli/software-basespace-cli-reference_material-list/000005857.md) (*July 17, 2026*)
* [Uploading and downloading FASTQ files with BaseSpace CLI Video](/software/basespace-cli/software-basespace-cli-reference_material-list/000005860.md) (*July 17, 2026*)
* [Using Beeline to regenerate GTC files with an alternate cluster file or manifest file](/microarray/other-illumina-array-software/microarray-other-illumina-array-software-reference_material-list/000002205.md) (*July 17, 2026*)
* [Viral Surveillance Panel (VSP) probes and panel design frequently asked questions (FAQs)](/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-faq-list/000007433.md) (*July 17, 2026*)
* [What Tecan/Illumina instrument and software combinations require the use of Tip Guides?](/microarray/tecan-iaps/microarray-tecan-iaps-faq-list/000009625.md) (*July 17, 2026*)
* [What are the different BaseSpace Account Types?](/software/basespace-sequence-hub/software-basespace-sequence-hub-faq-list/000002846.md) (*July 17, 2026*)
* [What is restricted when a BaseSpace Basic user exceeds 1TB storage limit](/software/basespace-sequence-hub/software-basespace-sequence-hub-reference_material-list/000005662.md) (*July 17, 2026*)
* [What is the BaseSpace data deletion policy?](/software/basespace-sequence-hub/software-basespace-sequence-hub-faq-list/000002847.md) (*July 17, 2026*)
* [What is the PhiX Control v3 Library and what is its function in Illumina Next Generation Sequencing](/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000001545.md) (*July 17, 2026*)
* [What to do if a BaseSpace analysis is stuck or stalled running](/software/basespace-sequence-hub/software-basespace-sequence-hub-troubleshooting-list/000007380.md) (*July 17, 2026*)
* [Infinium Methylation Screening Array Manifest Column Headings](/microarray/iscan/microarray-iscan-reference_material-list/000010058.md) (*July 16, 2026*)
* [Consumables and Equipment FAQ for the TruPath Genome assay](/library-preparation/general/library-preparation-general-faq-list/000010166.md) (*July 15, 2026*)
* [Creating custom reference genomes (non human) to use with DRAGEN apps on BaseSpace Sequence Hub](/software/general/software-general-troubleshooting-list/000007488.md) (*July 15, 2026*)
* [FAQs on the Illumina DNA Prep, (M) Tagmentation Library Preparation protocol](/library-preparation/general/library-preparation-general-faq-list/000001260.md) (*July 15, 2026*)
* [Frequently Asked Questions for Illumina FFPE DNA Prep with Exome 2.5 Enrichment](/library-preparation/general/library-preparation-general-faq-list/000009485.md) (*July 15, 2026*)
* [General FAQ for Illumina Rapid RNA kits](/library-preparation/general/library-preparation-general-faq-list/000010209.md) (*July 15, 2026*)
* [History of Infinium MethylationEPIC manifest versions](/microarray/general/microarray-general-reference_material-list/000002186.md) (*July 15, 2026*)
* [How to generate FASTQs from an incomplete run in Local Run Manager](/software/general/software-general-troubleshooting-list/000001807.md) (*July 15, 2026*)
* [Input recommendations for Illumina Rapid RNA Kits](/library-preparation/general/library-preparation-general-faq-list/000010212.md) (*July 15, 2026*)
* [Installing Reference Genomes on NovaSeq X Series Control Software v1.4](/instrumentation/general/instrumentation-general-reference_material-list/000010233.md) (*July 15, 2026*)
* [Kits, consumables, and reagent stability FAQ for Illumina Rapid RNA Kits](/library-preparation/general/library-preparation-general-faq-list/000010210.md) (*July 15, 2026*)
* [NovaSeq 6000 Control Software (NVCS) initialization failed at 93% (NVCS 1.7) or 92% (NVCS 1.5, 1.6)](/instrumentation/general/instrumentation-general-troubleshooting-list/000001855.md) (*July 15, 2026*)
* [QC steps FAQ for Illumina Rapid RNA Kits](/library-preparation/general/library-preparation-general-faq-list/000010214.md) (*July 15, 2026*)
* [Read Depth Requirements for Illumina Rapid RNA kits](/library-preparation/general/library-preparation-general-reference_material-list/000010216.md) (*July 15, 2026*)
* [Resources for Illumina Rapid RNA kits](/library-preparation/general/library-preparation-general-reference_material-list/000010220.md) (*July 15, 2026*)
* [Sequencing and run setup FAQ for Illumina Rapid RNA Kits](/library-preparation/general/library-preparation-general-faq-list/000010215.md) (*July 15, 2026*)
* [Troubleshooting Lane Pump Errors on the MiSeq](/instrumentation/general/instrumentation-general-troubleshooting-list/000001446.md) (*July 15, 2026*)
* [What is the difference between NextSeq PhiX Control Kit and PhiX Control v3?](/instrumentation/general/instrumentation-general-faq-list/000002925.md) (*July 15, 2026*)
* [Workflow FAQ for Illumina Rapid RNA Kits](/library-preparation/general/library-preparation-general-faq-list/000010213.md) (*July 15, 2026*)
* [i7 and i5 indexes in each Nextera XT index kit](/library-preparation/general/library-preparation-general-reference_material-list/000002230.md) (*July 15, 2026*)
* [Can a run be started on the NovaSeq X/X Plus while an analysis is ongoing?](/software/general/software-general-faq-list/000008267.md) (*June 10, 2026*)
* [How to configure the NextSeq 550 for BeadArray Scanning](/microarray/general/microarray-general-troubleshooting-list/000005236.md) (*June 10, 2026*)
* [How to connect remotely to Local Run Manager v4 on instrument](/software/general/software-general-reference_material-list/000002323.md) (*June 10, 2026*)
* [How to download only FASTQs from a BaseSpace project using BaseSpace CLI](/software/general/software-general-reference_material-list/000003376.md) (*June 10, 2026*)
* [How to edit a sample sheet and requeue an analysis in BaseSpace Sequence Hub](/software/general/software-general-reference_material-list/000001321.md) (*June 10, 2026*)
* [How to interpret the Controls Dashboard for Genotyping projects in GenomeStudio](/microarray/general/microarray-general-troubleshooting-list/000002747.md) (*June 10, 2026*)
* [How to set up a Private Domain on Illumina Connected Analytics for DRAGEN Array Cloud Analysis](/microarray/general/microarray-general-reference_material-list/000005851.md) (*June 10, 2026*)
* [Information on the Illumina Tagment DNA TDE1 Enzyme and Buffer Kits](/library-preparation/general/library-preparation-general-reference_material-list/000002753.md) (*June 10, 2026*)
* [Input recommendations and considerations for Illumina DNA Prep with Enrichment (S) Tagmentation](/library-preparation/general/library-preparation-general-reference_material-list/000001554.md) (*June 10, 2026*)
* [MiSeq Reporter common questions](/software/general/software-general-faq-list/000002240.md) (*June 10, 2026*)
* [Port Reset and Power Cycle Sequence for iScan or HiScan, without an AutoLoader](/microarray/general/microarray-general-reference_material-list/000001492.md) (*June 10, 2026*)
* [System error detected please power cycle and perform system checks error on the iSeq 100](/instrumentation/general/instrumentation-general-troubleshooting-list/000001367.md) (*June 10, 2026*)
* [TruSight Oncology 500 (TSO500) High Throughput Sample Sheet templates link](/software/general/software-general-reference_material-list/000003524.md) (*June 10, 2026*)
* [When will FASTQ files be N masked in Local Run Manager, MiSeq Reporter, bcl2fastq, and BCL Convert?](/software/general/software-general-faq-list/000003633.md) (*June 10, 2026*)


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