# Troubleshooting "Instrument Shell has Stopped Working" on the NovaSeq 6000

The "Instrument Shell has Stopped Working" error on the NovaSeq 6000 is a Windows error that generally indicates transient communications issues or hardware problems. This error will manifest as the Control Software crashing, and the pop-up shown below appearing on the screen.

**Instrument Shell has stopped working. A problem caused the program to stop working correctly. Please close the program.**

* **Close the program**
* **Debug the program**

  ![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-7e327800e6f3d51b43a8a527e7aa4046c29b660c%2Fimage1.jpg?alt=media\&token=29347d77-e6e6-4cc4-89e6-ab571372af2b)

**To Troubleshoot:**

* Power cycle the instrument. For further information, search for Knowledge Base article **How to Power cycle the NovaSeq 6000 System**.
* Collect the following files:
  * NovaSeq Control Software logs folder: C:\ProgramData\\\*\Illumina\NovaSeq\NovaSeq Control Software\Logs (zipped)
  * Windows logs\
    \- After collecting the logs, contact Illumina Technical Support (<techsupport@illumina.com>) to determine the next steps.

\
\
\ <br>

|                                                                                                                                                                                                                                                                                                                                                                        |
| :--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------: |
| *For any feedback or questions regarding this article (Illumina Knowledge Article #6676), contact Illumina Technical Support* [*techsupport@illumina.com*](mailto:techsupport@illumina.com?subject=Question%2FFeedback%20Regarding%20Illumina%20Knowledge%20Article%20#000006676%20-%20Instrumentation%20\&body=Dear%20Illumina%20Technical%20Support,%0D%0A%0D%0A)*.* |


---

# Agent Instructions: Querying This Documentation

If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter:

```
GET https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000006676.md?ask=<question>
```

The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
