# Reference Material

Software > On Instrument Analysis Software > Reference Material

* [Allowed characters for Run Names and Sample IDs in Local Run Manager v3](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000005750)
* [Comparison of MiSeq Reporter and Local Run Manager analysis workflows](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000005974)
* [Connecting remotely to Local Run Manager v4 on instrument](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000002323)
* [How to Specify Adapters for Trimming in Local Run Manager](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000003678)
* [How to add a Custom Reference Genome in Local Run Manager](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000002685)
* [How to generate FASTQ files for index reads in MiSeq Reporter](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000001326)
* [How to generate FASTQ files from an incomplete run in MiSeq Reporter](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000001325)
* [How to requeue analysis of a run with MiSeq Reporter](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000001782)
* [How to set up an AmpliSeq for Illumina run using Local Run Manager v1.3 for MiniSeq](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000002952)
* [How to use a custom library prep kit in Local Run Manager v2](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000001317)
* [How to use custom library prep and index kits with Local Run Manager v3 and v4](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000005897)
* [Local Run Manager How to create FASTQ files for index reads](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000001323)
* [Local Run Manager v3 with MiSeq Control Software v4 Introduction Support Webinar Video](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000008078)
* [Local Run Manager 如何利用不完整的测序结果生成FASTQ文件](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000007112)
* [Using Illumina Experiment Manager (IEM) to Create a Sample Sheet for Illumina Libraries Video](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000005856)
* [如何使MiSeq Reporter生成Index Reads 的FASTQ文件](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000007352)
* [如何使用MiSeq Reporter从未完成的run中创建出FASTQ文件](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000007401)
* [如何使用MiSeq Reporter重新分析一个run？](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000007342)
* [如何在Local Run Manage中进行重分析（Requeue）及导入运行数据（Import）再分析](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000007141)
* [如何将桌面测序仪和Local Run Manager与网络存储位置进行连接](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000007367)