> For the complete documentation index, see [llms.txt](https://knowledge.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list.md).

# FAQ

Instrumentation > MiSeq > FAQ

* [How to enable email notifications on the MiSeq](/instrumentation/miseq/instrumentation-miseq-faq-list/000007477.md)
* [Is it possible to perform a primer rehybridization on a MiSeq?](/instrumentation/miseq/instrumentation-miseq-faq-list/000002536.md)
* [MiSeq Flow cell compatibility for v2 and v3 reagent kits](/instrumentation/miseq/instrumentation-miseq-faq-list/000002538.md)
* [Run setup modes for the MiSeq](/instrumentation/miseq/instrumentation-miseq-faq-list/000005572.md)
* [Setting up a sample sheet to send all reads to Undetermined in MiSeq Reporter](/instrumentation/miseq/instrumentation-miseq-faq-list/000003628.md)
* [What are the MiSeq dimensions and placement requirements?](/instrumentation/miseq/instrumentation-miseq-faq-list/000007969.md)
* [What are the lab temperature requirements for the MiSeq?](/instrumentation/miseq/instrumentation-miseq-faq-list/000007967.md)
* [What are the power specifications for the MiSeq?](/instrumentation/miseq/instrumentation-miseq-faq-list/000007968.md)
* [What color of cap on the MiSeq flow cell container corresponds to which type of flow cell?](/instrumentation/miseq/instrumentation-miseq-faq-list/000003332.md)
* [What does the MiSeq status bar color mean?](/instrumentation/miseq/instrumentation-miseq-faq-list/000006205.md)
* [What if I did not name the sample sheet with the MiSeq reagent cartridge barcode number?](/instrumentation/miseq/instrumentation-miseq-faq-list/000002594.md)
* [What is the maximum read lengths and total number of cycles for MiSeq kits?](/instrumentation/miseq/instrumentation-miseq-faq-list/000002595.md)
* [What is the minimum PhiX amount that can be spiked into a run?](/instrumentation/miseq/instrumentation-miseq-faq-list/000002525.md)
* [When do quality scores appear during a sequencing run on the MiSeq?](/instrumentation/miseq/instrumentation-miseq-faq-list/000002600.md)
* [When is the demultiplexing summary generated for analyzed MiSeq runs?](/instrumentation/miseq/instrumentation-miseq-faq-list/000003372.md)
* [Which Illumina library preparation kits are compatible with the MiSeq?](/instrumentation/miseq/instrumentation-miseq-faq-list/000002521.md)
* [Which controls should be used when sequencing low diversity libraries on a MiSeq?](/instrumentation/miseq/instrumentation-miseq-faq-list/000002522.md)


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter, and the optional `goal` query parameter:

```
GET https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list.md?ask=<question>&goal=<endgoal>
```

`ask` is the immediate question: it should be specific, self-contained, and written in natural language.
`goal` is optional and describes the broader end goal you are ultimately trying to accomplish on behalf of the user. GitBook uses it to tailor the answer towards what is most useful for that goal.

The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.