> For the complete documentation index, see [llms.txt](https://knowledge.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008282.md).

# How to generate a Final Report and export a Data Table in GenomeStudio 2011.1 Methylation Module

The GenomeStudio 2011.1 Methylation Module provides several options for exporting methylation analysis results for further review or downstream analysis. Depending on the type of data required, users can generate a Final Report or export data from the Group Methylation Profile or Sample Methylation Profile Data Table.

The following sections describe how to generate a Final Report and export Data Table.

**Generating a Final Report**

1. In the GenomeStudio 2011.1 Methylation Module menu, select **Analysis > Reports**.

![](https://illumina.file.force.com/sfc/servlet.shepherd/version/download/0688X00000S9wQH?asPdf=false\&operationContext=CHATTER)

**Figure 1.** GenomeStudio 2011.1 Methylation Module Analysis menu with the Reports section highlighted.

2. Select **Final Report** and browse to the directory where the Final Report file will be saved. Enter the desired file name. The default filename extension is .txt which generates a tab-delimited text file.

![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-1dbe0ffbdf2a723928cc518950422c36887f3970%2Fimage1.png?alt=media)

**Figure 2.** GenomeStudio Methylation Reports window showing the Final Report selection and report file name and location.

3. Select the desired checkboxes to specify the options and fields to include in the report.

![](https://illumina.file.force.com/sfc/servlet.shepherd/version/download/0688X00000S9wQd?asPdf=false\&operationContext=CHATTER)

\*\*Figure 3.\*\*GenomeStudio Methylation Final Report window showing the tables, columns, and subcolumns available for inclusion in the Final Report.

4. After the report is generated, the following window appears:

![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-cfc47e862bb6ddff220338de91b4d169d432d64c%2Fimage2.png?alt=media)

**Figure 4.** Genome Studio Report window displayed after report generation.

5. Select **Yes** to view report, otherwise select **No**. To view the report at a later time, browse to the location where the report is saved and open the file.

### **Exporting Data Table**

1. Navigate to the Sample Methylation Profile or Group Methylation Profile Tab in the GenomeStudio 2011.1 Methylation project.
2. Select **Column Chooser** to select the columns to be displayed in the table.

![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-e6bc59044c3d6be2ada7969691acf8a644610e34%2Fimage3.png?alt=media)

**Figure 5.** Sample Methylation Profile tab with the Column Chooser button highlighted.

3. In the Column Chooser, select values under Hidden Columns or Hidden Subcolumns. Select the **<=Show** button to move the Hidden Columns to the Displayed Columns and/or Displayed Subcolumns.

![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-154258d40864b9d181c6d1d0e0596694465aa1ed%2Fimage4.png?alt=media)

**Figure 6.** Column Chooser window.

4. In the Sample Methylation Profile tab, select the **Export displayed data to a file** button to export the table.

![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-27942bb4caf7d433b80dba1bcd0032d61e7b6157%2Fimage5.png?alt=media)

**Figure 7.** Sample Methylation Profile tab with the Export displayed data to a file button highlighted.

5. Browse to the directory where the Data Table will be saved. Enter the desired file name and select Tab Delimited (\*.txt) or Data file (\*.csv) as the file type. Select **Save**.

![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-a5bc5cf68503f4d4f1c77d2a75e5f41da7383938%2Fimage6.png?alt=media)

**Figure 8.** File format options for saving the the exported GenomeStudio Methylation Data Table.

6. After the file is generated, the following window appears:

![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-603a2c69acc93950ca13c66e2348d56e6e82fb64%2Fimage7.png?alt=media)

**Figure 9.** Genome Studio Report window displayed after report generation.

7. Select **Yes** to view the file, otherwise select **No**. To view the file at a later time, browse to the location where the Data Table is saved and open the file.

**References:**

* [GenomeStudio Methylation Module v1.8 User Guide](https://support.illumina.com/downloads/genomestudio-2011-1-user-guides.html)
* [Introduction to GenomeStudio and BeadArray Controls Reporter for Infinium Methylation Support Webinar](/microarray/general/microarray-general-reference_material-list/000008062.md)

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| *For any feedback or questions regarding this article (Illumina Knowledge Article #8282), contact Illumina Technical Support* [*techsupport@illumina.com*](mailto:techsupport@illumina.com?subject=Question%2FFeedback%20Regarding%20Illumina%20Knowledge%20Article%20#000008282%20-%20Microarray%20\&body=Dear%20Illumina%20Technical%20Support,%0D%0A%0D%0A)*.* |


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