# How to filter for or exclude a list of a large number of SNPs in GenomeStudio

In the following example, a list of 27 SNPs from GSA-24v3-0\_A2 manifest will be selected and displayed in GenomeStudio full table data, while excluding all the remaining SNPs (654,000); or vice versa, the list of the 27 SNPs will be excluded, and the remaining 654,000 SNPs displayed.

1. **Select the SNPs of interest from the manifest file (csv format).** Select the SNPs according to the “**Name**” header, **not** the **“IlmnID”** header, as shown in the screenshots below.

![](/files/9KKBcutHjXtoQn2l8pHM)\
![](/files/dBmM70Rdkp1vOsb12jlm)

2. **Generate a .txt file (tab delimited text file) with two columns:**

* Insert the selected SNP names into the first column of an **empty excel sheet**. Label the header of the first column: “**Name**”.
* Label the header of the second column with any name that is **not a name that already exists in the GenomeStudio table**, to which the column will be imported. In the following example, the second column will be named: **XXXXX**. Assign to all SNPs the same number or letter. In the current example all SNPs will be assigned the number **1**.
* **Save** the excel sheet as a **tab delimited text** file (.txt format) then **close it**. **It is important to close the file**, otherwise it cannot be imported into GenomeStudio.

![](/files/ke9gfka1BWmxSuNqF2aK)

3. **Import the created .txt file into the GenomeStudio full table data:**
   1. Select the icon for ‘Import Columns’ (left arrow symbol) in the GenomeStudio full data table.

![](/files/jqhRWj5aENwt4VYBIvky)

1. 2\. Browse to the folder location where the generated txt file is saved, choose the file, and select **OK**.

![](/files/qGlH38WunubLQUOFmOHW)

1. 3\. The second column of the generated txt file is now imported into GenomeStudio data table, each cell (here each has number 1) assigned to the corresponding SNP name.

![](/files/NjLK3SmxgnIx7ICFzzRb)

4. **Filter the GenomeStudio table for the SNPs that have been assigned number 1** (in this example), according to instructions for “Filtering Rows” on page 38 of [GenomeStudio 2008.1 Framework User Guide](https://support.illumina.com/content/dam/illumina-support/documents/documentation/software_documentation/genomestudio/genomestudio-2-0/genomestudio-2008-1-framework-user-guide-11318815-a.pdf), and as shown in the screenshots below.

![](/files/L5VKoRAMBrPOjlyu5O7E)

![](/files/lRbwCYWiueGZr71zBVXd)

Only the SNPs of interest are now displayed in GenomeStudio table.

![](/files/zb7FMXipusBtJMo3zSIu)

5. **Alternatively, exclude the SNPs list (that have been assigned number 1 in this example) from the GenomeStudio table**, by selecting the **Not** checkbox in the **Filter Table Rows** window, as shown in the screenshot below.

![](/files/ffuIkOlp3eNmP6pDVjS4)\
**The selected SNPs of interest are now excluded from the GenomeStudio table.**

![](/files/JAKexkuGlYyGN4UuZx5e)

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| *For any feedback or questions regarding this article (Illumina Knowledge Article #7467), contact Illumina Technical Support* [*techsupport@illumina.com*](mailto:techsupport@illumina.com?subject=Question%2FFeedback%20Regarding%20Illumina%20Knowledge%20Article%20#000007467%20-%20Microarray%20\&body=Dear%20Illumina%20Technical%20Support,%0D%0A%0D%0A)*.* |


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