# Illumina RNA Prep Tagmentation (L) with Enrichment Input FAQs

**What is the RNA input requirement?**

The protocol is optimized for 10-100 ng of purified total RNA. Lower input amounts can reduce library yield.

**Is the kit compatible with RNA from FFPE samples?**

Yes, for FFPE samples with DV200 value <80% Illumina recommends increasing the number of PCR cycles to 17.

**What are the optimal 260/280 and 260/230 ratios for the input RNA?** (Refer to the first informational row, the second and third are provided for context.)

<table data-header-hidden><thead><tr><th valign="top"></th><th valign="top"></th><th valign="top"></th><th valign="top"></th></tr></thead><tbody><tr><td valign="top">Substance</td><td valign="top">Absorbance (nm)</td><td valign="top">260/280 Ratio</td><td valign="top">260/230 Ratio</td></tr><tr><td valign="top">Pure RNA</td><td valign="top">280</td><td valign="top">~2.0</td><td valign="top">2.0-2.2</td></tr><tr><td valign="top">EDTA, Carbohydrates, Phenol</td><td valign="top">230</td><td valign="top">&#x3C;1.5</td><td valign="top">&#x3C;2.0</td></tr><tr><td valign="top">Guanidine HCl</td><td valign="top">230</td><td valign="top">&#x3C;1.5</td><td valign="top">&#x3C;2.0</td></tr></tbody></table>

**What is the recommended quantitation method for input RNA?**

RNA should be quantified with a fluorometric method specific for RNA.

**Does input RNA need to be treated with DNase?**

Yes, DNA should be removed by including a DNase treatment with the RNA isolation method for sample purity and accurate quantification.

**What is the effect of residual DNA contamination?**

DNA can interfere with accurate quantification of the sample. DNA contamination will also impact the sequencing data, increasing the background level of expression for all transcripts.

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| *For any feedback or questions regarding this article (Illumina Knowledge Article #3293), contact Illumina Technical Support* [*techsupport@illumina.com*](mailto:techsupport@illumina.com?subject=Question%2FFeedback%20Regarding%20Illumina%20Knowledge%20Article%20#000003293%20-%20Library%20Preparation%20\&body=Dear%20Illumina%20Technical%20Support,%0D%0A%0D%0A)*.* |


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