> For the complete documentation index, see [llms.txt](https://knowledge.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://knowledge.illumina.com/microarray/iscan.md).

# iScan

- [FAQ](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-faq-list.md)
- [Can an iScan send notifications when it has completed scanning Infinium BeadChips?](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-faq-list/000007331.md)
- [How to determine the iScan Control Software version](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-faq-list/000005984.md)
- [Troubleshooting](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-troubleshooting-list.md)
- [How to check for corrupt DMAPs before scanning BeadChips using the iScan](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-troubleshooting-list/000003861.md)
- [Reference Material](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-reference_material-list.md)
- [How the iScan determines beadchip type and which scan settings file to apply](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-reference_material-list/000009868.md)
- [How to set up Autoconvert in the iScan Control Software](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-reference_material-list/000001498.md)
- [Infinium Methylation Screening Array Manifest Column Headings](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-reference_material-list/000010058.md)
- [Power Cycle and Port Reset Sequence for one iScan with one AutoLoader](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-reference_material-list/000006785.md)
- [Power Cycle and Port Reset Sequence for two iScans and one AutoLoader](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-reference_material-list/000001502.md)
- [Using network file shares for data input and output in iScan Control Software (ICS)](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-reference_material-list/000005590.md)


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter, and the optional `goal` query parameter:

```
GET https://knowledge.illumina.com/microarray/iscan.md?ask=<question>&goal=<endgoal>
```

`ask` is the immediate question: it should be specific, self-contained, and written in natural language.
`goal` is optional and describes the broader end goal you are ultimately trying to accomplish on behalf of the user. GitBook uses it to tailor the answer towards what is most useful for that goal.

The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
