> For the complete documentation index, see [llms.txt](https://knowledge.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://knowledge.illumina.com/software/cloud-software.md).

# Cloud Software

- [FAQ](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list.md)
- [Are the files for SAV available from BaseSpace if the run was performed with only Run Monitoring?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000007165.md)
- [Different coverage reports from the DRAGEN Enrichment analysis](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000006992.md)
- [How to generate Audit Logs in the Illumina Admin Console?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000005448.md)
- [How to run the DRAGEN PopGen app on BaseSpace?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000007517.md)
- [How to transfer runs/datasets between different regional servers using the BaseSpace command-line interface (CLI)](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000005682.md)
- [How to use an API call to download FastQ files from BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000007506.md)
- [Reference Material](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list.md)
- [BaseSpace Command Line Tools for Basic Analysis - Part I Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008080.md)
- [BaseSpace Command Line Tools for Basic Analysis - Part II Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008082.md)
- [BaseSpace Data Model Explained](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000007009.md)
- [BaseSpace Informatics Suite Intro to Cohort Analyzer and Correlation Engine Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008089.md)
- [BaseSpace Sequence Hub Introduction and Analysis Overview Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008087.md)
- [BaseSpace Sequence Hub informational resources](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000002876.md)
- [How to Requeue Analysis for a NextSeq 1000/2000 run using BaseSpace BCL Convert Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000006955.md)
- [How to Requeue a Run using BaseSpace Sequence Hub Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000006956.md)
- [How to configure Single-Sign On (SSO) for an Illumina Enterprise domain using Entra ID](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000005972.md)
- [How to configure Single-Sign On (SSO) for an Illumina Enterprise domain using Okta](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000006210.md)
- [How to create and invite users to a workgroup on BaseSpace Sequence Hub](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000005878.md)
- [How to delete a variant with API in Emedgene Curate](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000009725.md)
- [How to download specific file types when downloading runs from BaseSpace using BaseSpace CLI](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000003154.md)
- [How to find the Demultiplexing Summary and SampleSheetUsed in BaseSpace?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000003652.md)
- [How to get started with BaseSpace Command Line Interface (CLI) Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000005593.md)
- [How to import files into a BaseSpace Project using the web Interface](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000003651.md)
- [How to launch any app in BaseSpace using BaseSpace Command Line Interface (CLI)](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000007759.md)
- [How to manage status.illumina.com subscriptions](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000009049.md)
- [How to set the default location for uploaded runs to BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000001847.md)
- [How to use the Resources page to add custom reference files for Run Planning for NovaSeq X/X Plus runs](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008500.md)
- [Investigation of Log4j Vulnerability with BaseSpace Sequence Hub (BSSH) Cloud](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000006337.md)
- [Panel of Normals TruSight Hereditary Cancer Panel datasets for copy number variations in BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000007929.md)
- [RNA Sequencing Part III - Introduction to Analysis Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008079.md)
- [Reference genome and target regions BED file for the DRAGEN PopGen app](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000007889.md)
- [TruSight Oncology 500 version 2 Analysis Overview Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008077.md)
- [Which BaseSpace Subscription is needed to process Illumina 3' Single Cell RNA Samples](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000009794.md)
- [使用BaseSpace基因云计算平台和bcl2fastq2 2.17以及以上版本软件时，如何排查拆分异常情况](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000007134.md)
- [Troubleshooting](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list.md)
- [BaseSpace and Proactive outage resource page](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000007381.md)
- [Details about DRAGEN Metagenomics Kraken2 Database](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000008424.md)
- [Troubleshooting DRAGEN analysis error UMI processing is enabled but QNAME does not have UMI section](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000008107.md)
- [Troubleshooting DRAGEN single cell RNA App UMI error in BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000009852.md)
- [Troubleshooting emptying the trash in BaseSpace Sequence Hub](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000007563.md)
- [Why an appsession API call may only return a subset of datasets from BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000007567.md)


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