# Cloud Software

- [Reference Material](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list.md)
- [BaseSpace Command Line Tools for Basic Analysis Part I Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008080.md)
- [BaseSpace Command Line Tools for Basic Analysis Part II Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008082.md)
- [BaseSpace Data Model Explained](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000007009.md)
- [BaseSpace Informatics Suite Intro to Cohort Analyzer and Correlation Engine Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008089.md)
- [BaseSpace Sequence Hub Introduction and Analysis Overview Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008087.md)
- [BaseSpace Sequence Hub informational resources](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000002876.md)
- [DRAGEN Enrichment App in BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000003686.md)
- [DRAGEN Metagenomics Pipeline in BaseSpace general information](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000003688.md)
- [Enrichment Data Analysis Introduction Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008090.md)
- [How to Analyze Data using BaseSpace DRAGEN COVID Lineage App Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000006961.md)
- [How to Requeue Analysis for a NextSeq 1000/2000 run using BaseSpace BCL Convert Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000006955.md)
- [How to Requeue a Run using BaseSpace Sequence Hub Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000006956.md)
- [How to authenticate BaseSpace CLI to another region or Enterprise domain](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000005560.md)
- [How to concatenate the FASTQ files from different lanes](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000002035.md)
- [How to configure Single Sign On (SSO) for an Illumina Enterprise domain using Entra ID](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000005972.md)
- [How to configure Single Sign On (SSO) for an Illumina Enterprise domain using Okta](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000006210.md)
- [How to delete a variant with API in Emedgene Curate](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000009725.md)
- [How to download FASTQs from specific lanes using Basespace CLI](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000006973.md)
- [How to download only FASTQs from a BaseSpace project using BaseSpace CLI](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000003376.md)
- [How to download specific file types when downloading runs from BaseSpace using BaseSpace CLI](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000003154.md)
- [How to edit a sample sheet and requeue an analysis in BaseSpace Sequence Hub](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000001321.md)
- [How to find the Demultiplexing Summary and SampleSheetUsed in BaseSpace?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000003652.md)
- [How to get started with BaseSpace Command Line Interface (CLI) Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000005593.md)
- [How to import files into a BaseSpace Project using the web Interface](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000003651.md)
- [How to install the BaseSpace Sequence Hub Downloader on Mac OS](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000003049.md)
- [How to invite users to an Enterprise domain workgroup, via a collaborative Enterprise domain account](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000005878.md)
- [How to launch any app in BaseSpace using BaseSpace Command Line Interface (CLI)](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000007759.md)
- [How to launch the DRAGEN COVID Lineage app using BaseSpace CLI?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000005230.md)
- [How to list BaseSpace entities using BaseSpace CLI](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000003682.md)
- [How to manage status.illumina.com subscriptions](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000009049.md)
- [How to requeue (re launch) the autolaunch analysis on BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008562.md)
- [How to set the default location for uploaded runs to BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000001847.md)
- [How to share BaseSpace sequencing runs and project data using 'Get Link' option](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000001597.md)
- [How to unlock a Biosample in BaseSpace that is locked due to Biosample Data Aggregation](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000003653.md)
- [How to upload a run to BaseSpace using BaseSpace Command Line Interface (CLI)](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000003298.md)
- [How to use the DRAGEN TSO500 v1.1/DRAGEN TSO500 ctDNA v1.2 pipelines on ICA using FASTQ files](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000007098.md)
- [How to use the Resources page to add custom reference files for Run Planning for NovaSeq X/X Plus runs](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008500.md)
- [Instructions for using BaseSpace CLI on Windows to upload runs](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000007950.md)
- [Investigation of Log4j Vulnerability with BaseSpace Sequence Hub (BSSH) Cloud](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000006337.md)
- [Investigation of Log4j Vulnerability with Illumina Connected Analytics (ICA)](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000006343.md)
- [Investigation of Log4j Vulnerability with TruSight Software Suite (TSS)](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000006341.md)
- [Panel of Normals TruSight Hereditary Cancer Panel datasets for copy number variations in BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000007929.md)
- [RNA Sequencing Part III Introduction to Analysis Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008079.md)
- [Reference genome and target regions BED file for the DRAGEN PopGen app](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000007889.md)
- [Transferring data between a personal account and a Professional workgroup in BaseSpace Sequence Hub](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000001798.md)
- [TruSight Oncology 500 version 2 Analysis Overview Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008077.md)
- [Uploading Runs BaseSpace Command Line Interface (CLI) Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000005857.md)
- [Uploading and downloading FASTQ files with BaseSpace CLI Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000005860.md)
- [What is restricted when a BaseSpace Basic user exceeds 1TB storage limit](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000005662.md)
- [Which BaseSpace Subscription is needed to process Illumina 3' Single Cell RNA Samples](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000009794.md)
- [Which BaseSpace apps and features use Illumina Connected Analytics](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000009045.md)
- [使用BaseSpace基因云计算平台和bcl2fastq2 2.17以及以上版本软件时，如何排查拆分异常情况](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000007134.md)
- [Troubleshooting](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list.md)
- [BaseSpace and Proactive outage resource page](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000007381.md)
- [DRAGEN Imputation App v 4.0.3 on BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000007061.md)
- [Details about DRAGEN Metagenomics Kraken2 Database](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000008424.md)
- [Emedgene troubleshooting information request form](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000008955.md)
- [How to demultiplex mixed libraries on the same lane in BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000002853.md)
- [How to download files needed for Sequencing Analysis Viewer from BaseSpace using BaseSpace CLI](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000006942.md)
- [How to recover a BaseSpace password reset email](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000003658.md)
- [How to restart Universal Copy Service when a run is stuck uploading to BaseSpace Sequence Hub](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000001808.md)
- [How to review bsshoutput.json to assess BaseSpace file project mapping from Instrument Autolaunch Analysis](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000008916.md)
- [Requirements for uploading FASTQ Files to BaseSpace via web interface](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000001313.md)
- [Troubleshooting "Failed to validate certificate" error when launching IGV BaseSpace Application](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000007890.md)
- [Troubleshooting DRAGEN analysis error UMI processing is enabled but QNAME does not have UMI section](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000008107.md)
- [Troubleshooting DRAGEN single cell RNA App UMI error in BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000009852.md)
- [Troubleshooting Illumina Service Connector not connected for Window computer](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000008566.md)
- [Troubleshooting demultiplexing issues using BaseSpace Sequence Hub and bcl2fastq2 v2.17+](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000002875.md)
- [Troubleshooting emptying the trash in BaseSpace Sequence Hub](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000007563.md)
- [Understanding how instrument autolaunch analysis maps to BaseSpace projects](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000008915.md)
- [What to do if a BaseSpace analysis is stuck or stalled running](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000007380.md)
- [Why an appsession API call may only returning a subset of datasets from BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000007567.md)
- [FAQ](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list.md)
- [Are the files for SAV available from BaseSpace if the run was performed with only Run Monitoring?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000007165.md)
- [BaseSpace Sequence Hub archival storage FAQs](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000005875.md)
- [BaseSpace v7.12 update frequently asked questions](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000007948.md)
- [Can BaseSpace files be transferred directly to AWS (Amazon Web Services)?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000002832.md)
- [Coverage and frequency requirements for variants in FASTA output from the DRAGEN COVID Lineage app](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000005335.md)
- [Different coverage reports from the DRAGEN Enrichment analysis](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000006992.md)
- [How does BaseSpace Command Line Interface (CLI) check the integrity of file uploads?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000008437.md)
- [How to access Illumina Admin Console for Illumina Connected Software](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000005963.md)
- [How to archive and retrieve data in BaseSpace using BaseSpace Command Line Interface (CLI) commands?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000005447.md)
- [How to generate Audit Logs in BaseSpace Sequence Hub?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000005448.md)
- [How to requeue FASTQ Generation using BCL Convert on BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000006472.md)
- [How to run the DRAGEN PopGen app on BaseSpace?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000007517.md)
- [How to transfer runs/datasets between different regional servers using BaseSpace CLI](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000005682.md)
- [How to use a custom virus primer BED file with the DRAGEN COVID Lineage app on BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000006251.md)
- [How to use an API call to download FastQ files from BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000007506.md)
- [How to view files from Illumina Connected Analytics in Integrative Genomics Viewer](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000007465.md)
- [Is there a limit to the number of files that can be stored within an ICA project?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000009959.md)
- [Running DRAGEN Amplicon 3.10.4 on BaseSpace on a single sample type with a hg38 reference](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000007870.md)
- [What are the different BaseSpace Account Types?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000002846.md)
- [What is the BaseSpace data deletion policy?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000002847.md)
- [What is the process for renewing a BaseSpace Professional Workgroup account?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000006724.md)


---

# Agent Instructions: Querying This Documentation

If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter:

```
GET https://knowledge.illumina.com/software/cloud-software.md?ask=<question>
```

The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.