# Cloud Software

- [Reference Material](/software/cloud-software/software-cloud-software-reference_material-list.md)
- [BaseSpace Command Line Tools for Basic Analysis Part I Support Webinar Video](/software/cloud-software/software-cloud-software-reference_material-list/000008080.md)
- [BaseSpace Command Line Tools for Basic Analysis Part II Support Webinar Video](/software/cloud-software/software-cloud-software-reference_material-list/000008082.md)
- [BaseSpace Data Model Explained](/software/cloud-software/software-cloud-software-reference_material-list/000007009.md)
- [BaseSpace Informatics Suite Intro to Cohort Analyzer and Correlation Engine Support Webinar Video](/software/cloud-software/software-cloud-software-reference_material-list/000008089.md)
- [BaseSpace Sequence Hub Introduction and Analysis Overview Support Webinar Video](/software/cloud-software/software-cloud-software-reference_material-list/000008087.md)
- [BaseSpace Sequence Hub informational resources](/software/cloud-software/software-cloud-software-reference_material-list/000002876.md)
- [DRAGEN Enrichment App in BaseSpace](/software/cloud-software/software-cloud-software-reference_material-list/000003686.md)
- [DRAGEN Metagenomics Pipeline in BaseSpace general information](/software/cloud-software/software-cloud-software-reference_material-list/000003688.md)
- [Enrichment Data Analysis Introduction Support Webinar Video](/software/cloud-software/software-cloud-software-reference_material-list/000008090.md)
- [How to Analyze Data using BaseSpace DRAGEN COVID Lineage App Video](/software/cloud-software/software-cloud-software-reference_material-list/000006961.md)
- [How to Requeue Analysis for a NextSeq 1000/2000 run using BaseSpace BCL Convert Video](/software/cloud-software/software-cloud-software-reference_material-list/000006955.md)
- [How to Requeue a Run using BaseSpace Sequence Hub Video](/software/cloud-software/software-cloud-software-reference_material-list/000006956.md)
- [How to authenticate BaseSpace CLI to another region or Enterprise domain](/software/cloud-software/software-cloud-software-reference_material-list/000005560.md)
- [How to concatenate the FASTQ files from different lanes](/software/cloud-software/software-cloud-software-reference_material-list/000002035.md)
- [How to configure Single Sign On (SSO) for an Illumina Enterprise domain using Entra ID](/software/cloud-software/software-cloud-software-reference_material-list/000005972.md)
- [How to configure Single Sign On (SSO) for an Illumina Enterprise domain using Okta](/software/cloud-software/software-cloud-software-reference_material-list/000006210.md)
- [How to delete a variant with API in Emedgene Curate](/software/cloud-software/software-cloud-software-reference_material-list/000009725.md)
- [How to download FASTQs from specific lanes using Basespace CLI](/software/cloud-software/software-cloud-software-reference_material-list/000006973.md)
- [How to download only FASTQs from a BaseSpace project using BaseSpace CLI](/software/cloud-software/software-cloud-software-reference_material-list/000003376.md)
- [How to download specific file types when downloading runs from BaseSpace using BaseSpace CLI](/software/cloud-software/software-cloud-software-reference_material-list/000003154.md)
- [How to edit a sample sheet and requeue an analysis in BaseSpace Sequence Hub](/software/cloud-software/software-cloud-software-reference_material-list/000001321.md)
- [How to find the Demultiplexing Summary and SampleSheetUsed in BaseSpace?](/software/cloud-software/software-cloud-software-reference_material-list/000003652.md)
- [How to get started with BaseSpace Command Line Interface (CLI) Video](/software/cloud-software/software-cloud-software-reference_material-list/000005593.md)
- [How to import files into a BaseSpace Project using the web Interface](/software/cloud-software/software-cloud-software-reference_material-list/000003651.md)
- [How to install the BaseSpace Sequence Hub Downloader on Mac OS](/software/cloud-software/software-cloud-software-reference_material-list/000003049.md)
- [How to invite users to an Enterprise domain workgroup, via a collaborative Enterprise domain account](/software/cloud-software/software-cloud-software-reference_material-list/000005878.md)
- [How to launch any app in BaseSpace using BaseSpace Command Line Interface (CLI)](/software/cloud-software/software-cloud-software-reference_material-list/000007759.md)
- [How to launch the DRAGEN COVID Lineage app using BaseSpace CLI?](/software/cloud-software/software-cloud-software-reference_material-list/000005230.md)
- [How to list BaseSpace entities using BaseSpace CLI](/software/cloud-software/software-cloud-software-reference_material-list/000003682.md)
- [How to manage status.illumina.com subscriptions](/software/cloud-software/software-cloud-software-reference_material-list/000009049.md)
- [How to requeue (re launch) the autolaunch analysis on BaseSpace](/software/cloud-software/software-cloud-software-reference_material-list/000008562.md)
- [How to set the default location for uploaded runs to BaseSpace](/software/cloud-software/software-cloud-software-reference_material-list/000001847.md)
- [How to share BaseSpace sequencing runs and project data using 'Get Link' option](/software/cloud-software/software-cloud-software-reference_material-list/000001597.md)
- [How to unlock a Biosample in BaseSpace that is locked due to Biosample Data Aggregation](/software/cloud-software/software-cloud-software-reference_material-list/000003653.md)
- [How to upload a run to BaseSpace using BaseSpace Command Line Interface (CLI)](/software/cloud-software/software-cloud-software-reference_material-list/000003298.md)
- [How to use the DRAGEN TSO500 v1.1/DRAGEN TSO500 ctDNA v1.2 pipelines on ICA using FASTQ files](/software/cloud-software/software-cloud-software-reference_material-list/000007098.md)
- [How to use the Resources page to add custom reference files for Run Planning for NovaSeq X/X Plus runs](/software/cloud-software/software-cloud-software-reference_material-list/000008500.md)
- [Instructions for using BaseSpace CLI on Windows to upload runs](/software/cloud-software/software-cloud-software-reference_material-list/000007950.md)
- [Investigation of Log4j Vulnerability with BaseSpace Sequence Hub (BSSH) Cloud](/software/cloud-software/software-cloud-software-reference_material-list/000006337.md)
- [Investigation of Log4j Vulnerability with Illumina Connected Analytics (ICA)](/software/cloud-software/software-cloud-software-reference_material-list/000006343.md)
- [Investigation of Log4j Vulnerability with TruSight Software Suite (TSS)](/software/cloud-software/software-cloud-software-reference_material-list/000006341.md)
- [Panel of Normals TruSight Hereditary Cancer Panel datasets for copy number variations in BaseSpace](/software/cloud-software/software-cloud-software-reference_material-list/000007929.md)
- [RNA Sequencing Part III Introduction to Analysis Support Webinar Video](/software/cloud-software/software-cloud-software-reference_material-list/000008079.md)
- [Reference genome and target regions BED file for the DRAGEN PopGen app](/software/cloud-software/software-cloud-software-reference_material-list/000007889.md)
- [Transferring data between a personal account and a Professional workgroup in BaseSpace Sequence Hub](/software/cloud-software/software-cloud-software-reference_material-list/000001798.md)
- [TruSight Oncology 500 version 2 Analysis Overview Support Webinar Video](/software/cloud-software/software-cloud-software-reference_material-list/000008077.md)
- [Uploading Runs BaseSpace Command Line Interface (CLI) Video](/software/cloud-software/software-cloud-software-reference_material-list/000005857.md)
- [Uploading and downloading FASTQ files with BaseSpace CLI Video](/software/cloud-software/software-cloud-software-reference_material-list/000005860.md)
- [What is restricted when a BaseSpace Basic user exceeds 1TB storage limit](/software/cloud-software/software-cloud-software-reference_material-list/000005662.md)
- [Which BaseSpace Subscription is needed to process Illumina 3' Single Cell RNA Samples](/software/cloud-software/software-cloud-software-reference_material-list/000009794.md)
- [Which BaseSpace apps and features use Illumina Connected Analytics](/software/cloud-software/software-cloud-software-reference_material-list/000009045.md)
- [使用BaseSpace基因云计算平台和bcl2fastq2 2.17以及以上版本软件时，如何排查拆分异常情况](/software/cloud-software/software-cloud-software-reference_material-list/000007134.md)
- [Troubleshooting](/software/cloud-software/software-cloud-software-troubleshooting-list.md)
- [BaseSpace and Proactive outage resource page](/software/cloud-software/software-cloud-software-troubleshooting-list/000007381.md)
- [DRAGEN Imputation App v 4.0.3 on BaseSpace](/software/cloud-software/software-cloud-software-troubleshooting-list/000007061.md)
- [Details about DRAGEN Metagenomics Kraken2 Database](/software/cloud-software/software-cloud-software-troubleshooting-list/000008424.md)
- [Emedgene troubleshooting information request form](/software/cloud-software/software-cloud-software-troubleshooting-list/000008955.md)
- [How to demultiplex mixed libraries on the same lane in BaseSpace](/software/cloud-software/software-cloud-software-troubleshooting-list/000002853.md)
- [How to download files needed for Sequencing Analysis Viewer from BaseSpace using BaseSpace CLI](/software/cloud-software/software-cloud-software-troubleshooting-list/000006942.md)
- [How to recover a BaseSpace password reset email](/software/cloud-software/software-cloud-software-troubleshooting-list/000003658.md)
- [How to restart Universal Copy Service when a run is stuck uploading to BaseSpace Sequence Hub](/software/cloud-software/software-cloud-software-troubleshooting-list/000001808.md)
- [How to review bsshoutput.json to assess BaseSpace file project mapping from Instrument Autolaunch Analysis](/software/cloud-software/software-cloud-software-troubleshooting-list/000008916.md)
- [Requirements for uploading FASTQ Files to BaseSpace via web interface](/software/cloud-software/software-cloud-software-troubleshooting-list/000001313.md)
- [Troubleshooting "Failed to validate certificate" error when launching IGV BaseSpace Application](/software/cloud-software/software-cloud-software-troubleshooting-list/000007890.md)
- [Troubleshooting DRAGEN analysis error UMI processing is enabled but QNAME does not have UMI section](/software/cloud-software/software-cloud-software-troubleshooting-list/000008107.md)
- [Troubleshooting DRAGEN single cell RNA App UMI error in BaseSpace](/software/cloud-software/software-cloud-software-troubleshooting-list/000009852.md)
- [Troubleshooting Illumina Service Connector not connected for Window computer](/software/cloud-software/software-cloud-software-troubleshooting-list/000008566.md)
- [Troubleshooting demultiplexing issues using BaseSpace Sequence Hub and bcl2fastq2 v2.17+](/software/cloud-software/software-cloud-software-troubleshooting-list/000002875.md)
- [Troubleshooting emptying the trash in BaseSpace Sequence Hub](/software/cloud-software/software-cloud-software-troubleshooting-list/000007563.md)
- [Understanding how instrument autolaunch analysis maps to BaseSpace projects](/software/cloud-software/software-cloud-software-troubleshooting-list/000008915.md)
- [What to do if a BaseSpace analysis is stuck or stalled running](/software/cloud-software/software-cloud-software-troubleshooting-list/000007380.md)
- [Why an appsession API call may only returning a subset of datasets from BaseSpace](/software/cloud-software/software-cloud-software-troubleshooting-list/000007567.md)
- [FAQ](/software/cloud-software/software-cloud-software-faq-list.md)
- [Are the files for SAV available from BaseSpace if the run was performed with only Run Monitoring?](/software/cloud-software/software-cloud-software-faq-list/000007165.md)
- [BaseSpace Sequence Hub archival storage FAQs](/software/cloud-software/software-cloud-software-faq-list/000005875.md)
- [BaseSpace v7.12 update frequently asked questions](/software/cloud-software/software-cloud-software-faq-list/000007948.md)
- [Can BaseSpace files be transferred directly to AWS (Amazon Web Services)?](/software/cloud-software/software-cloud-software-faq-list/000002832.md)
- [Coverage and frequency requirements for variants in FASTA output from the DRAGEN COVID Lineage app](/software/cloud-software/software-cloud-software-faq-list/000005335.md)
- [Different coverage reports from the DRAGEN Enrichment analysis](/software/cloud-software/software-cloud-software-faq-list/000006992.md)
- [How does BaseSpace Command Line Interface (CLI) check the integrity of file uploads?](/software/cloud-software/software-cloud-software-faq-list/000008437.md)
- [How to access Illumina Admin Console for Illumina Connected Software](/software/cloud-software/software-cloud-software-faq-list/000005963.md)
- [How to archive and retrieve data in BaseSpace using BaseSpace Command Line Interface (CLI) commands?](/software/cloud-software/software-cloud-software-faq-list/000005447.md)
- [How to generate Audit Logs in BaseSpace Sequence Hub?](/software/cloud-software/software-cloud-software-faq-list/000005448.md)
- [How to requeue FASTQ Generation using BCL Convert on BaseSpace](/software/cloud-software/software-cloud-software-faq-list/000006472.md)
- [How to run the DRAGEN PopGen app on BaseSpace?](/software/cloud-software/software-cloud-software-faq-list/000007517.md)
- [How to transfer runs/datasets between different regional servers using BaseSpace CLI](/software/cloud-software/software-cloud-software-faq-list/000005682.md)
- [How to use a custom virus primer BED file with the DRAGEN COVID Lineage app on BaseSpace](/software/cloud-software/software-cloud-software-faq-list/000006251.md)
- [How to use an API call to download FastQ files from BaseSpace](/software/cloud-software/software-cloud-software-faq-list/000007506.md)
- [How to view files from Illumina Connected Analytics in Integrative Genomics Viewer](/software/cloud-software/software-cloud-software-faq-list/000007465.md)
- [Is there a limit to the number of files that can be stored within an ICA project?](/software/cloud-software/software-cloud-software-faq-list/000009959.md)
- [Running DRAGEN Amplicon 3.10.4 on BaseSpace on a single sample type with a hg38 reference](/software/cloud-software/software-cloud-software-faq-list/000007870.md)
- [What are the different BaseSpace Account Types?](/software/cloud-software/software-cloud-software-faq-list/000002846.md)
- [What is the BaseSpace data deletion policy?](/software/cloud-software/software-cloud-software-faq-list/000002847.md)
- [What is the process for renewing a BaseSpace Professional Workgroup account?](/software/cloud-software/software-cloud-software-faq-list/000006724.md)