> For the complete documentation index, see [llms.txt](https://knowledge.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://knowledge.illumina.com/microarray/general.md).

# General

- [Troubleshooting](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list.md)
- [BlueFuse Multi: How to re center Log R Ratio (LRR) line](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000003859.md)
- [Create a batch file for simple BeadChip accessioning to Illumina Microarray Analytics PGx Analysis](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000005887.md)
- [GenomeStudio Methylation Module why are some beta values blank even though there are intensities reported for them?](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000003003.md)
- [How to Determine the Sex of Samples in a GenomeStudio Methylation Project](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000008918.md)
- [How to Include Only Selected SNPs in a Final Report in a GenomeStudio Genotyping Project](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000005451.md)
- [How to Troubleshoot the GenomeStudio Genotyping Error "Error writing data beyond end of sample"](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000003031.md)
- [How to configure the NextSeq 550 for BeadArray Scanning](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000005236.md)
- [How to create region not called by the algorithm for BeadArray data in BlueFuse Multi](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000005044.md)
- [How to identify which Manifest and Cluster Files were used to generate a GTC File?](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000001484.md)
- [How to interpret the Controls Dashboard for Genotyping projects in GenomeStudio](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000002747.md)
- [How to mark regions as "Not Reported" in BlueFuse Multi](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000005042.md)
- [How to recoat Infinium BeadChip with XC4](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000003735.md)
- [How to troubleshoot the GenomeStudio error "Index was outside the bounds of the array."](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000001901.md)
- [Infinium Assay Hybridization and XStain Troubleshooting Guide](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000005025.md)
- [Precipitation and Resuspension Troubleshooting Guide in Infinium Assay](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000003842.md)
- [Single sample group formation to reduce GenomeStudio Methylation Module crashing during analysis](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000001887.md)
- [Switching between AutoLoader Mode and Manual Mode when using iScan](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000005545.md)
- [Troubleshooting "Error in reading file Normalization Transformation incorrect version" in Array ACLI](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000007824.md)
- [Troubleshooting "Unknown cluster statistics version" error in GenomeStudio 2011.1](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000002697.md)
- [Troubleshooting DRAGEN Array Cloud error Sample sheet missing required columns](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000010004.md)
- [What are the ch probes in the MethylationEPIC Array manifest?](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000005501.md)
- [What is the correct format for DRAGEN Array IDAT CSV Sample Sheet?](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000006290.md)
- [FAQ](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list.md)
- [Can Infinium BeadChips that have been frozen still be used?](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000005924.md)
- [Can Infinium reagents be freeze thawed?](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000006651.md)
- [Can PGx Microarray Analysis be run without interpretation if interpretation has been quoted?](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000007146.md)
- [Can a single Autoloader/iScan run contain multiple types of beadchips?](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000008643.md)
- [Does DRAGEN Array have a Call Rate limit to estimate gender?](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000009191.md)
- [How is the Reproducibility Frequency calculated in GenomeStudio?](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000009677.md)
- [How long can bisulfite converted DNA be stored in 20°C for use in Infinium Methylation arrays?](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000006515.md)
- [How to format file path for DRAGEN Array IDAT sample sheet and GTC sample sheet for Windows OS](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000008510.md)
- [How to select GenTrain version in GenomeStudio 2.0](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000009170.md)
- [Infinium BeadChips Shelf Life and Expiration Timeline](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000007091.md)
- [Is a sample sheet required to run DRAGEN Array?](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000009345.md)
- [Is it possible to add or remove fields in DRAGEN Array Cloud Genotyping Final Report?](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000009460.md)
- [Location of the iScan and Tecan Serial Number Stickers](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000009652.md)
- [What Are the Required iScan Control Software Version and Scan Settings for Infinium EX BeadChips?](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000008679.md)
- [What GTC files can be used with DRAGEN Array Local?](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000008555.md)
- [What Is the Expected DNA Fragment Size Following the Fragment DNA Step of the Infinium Assay?](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000005837.md)
- [What is the correct order of addition of Infinium Amplification reagents?](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000005874.md)
- [What is the limit of detection for LOH/AOH for the CytoSNP 850K array?](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000006024.md)
- [Which Infinium BeadChip types can be scanned using the NextSeq 550?](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000003871.md)
- [Which fluorometric quantification method to use for quantifying input DNA for the Infinium Assay?](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000008332.md)
- [Reference Material](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list.md)
- [Annotation database versions for use with BlueFuse Multi v4.4+](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000002174.md)
- [Best practices for glass back plate care and handling for Infinium HD, HTS, LCG, and XT assays](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001421.md)
- [CNV Analysis in GenomeStudio using cnvPartition Plug in and Illumina Genome Viewer](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000002766.md)
- [Can GenomeStudio 2.0 genotyping projects be merged?](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000003847.md)
- [Can Genotype Call (GTC) files be used as input for GenomeStudio?](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000005917.md)
- [Comparison of GenomeStudio v2.0 and GenomeStudio v2011.1](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000002887.md)
- [Confirming identities of replicate & matched samples with SNP targeted assays in methylation arrays](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000003719.md)
- [Considerations when deploying Classic vs Server Mode for BlueFuse Multi](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000003739.md)
- [DMAP File Availability and Retention Policy for Infinium Arrays](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000005602.md)
- [DNA strand designations](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000002837.md)
- [Description of suffixes in the cg probes ID in Infinium MethylationEPIC v2.0](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008344.md)
- [DesignStudio Microarray Assay Designer Input Target File Templates](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000007910.md)
- [Download and installation of Dragen array software for local analysis](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000010127.md)
- [Evaluation of Infinium Staining Controls in the GenomeStudio Controls Dashboard](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000006555.md)
- [Finding genes associated with a specific SNP using the Genome Browser](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000003503.md)
- [GenomeStudio Advanced Analysis Tools Support Webinar Video](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008071.md)
- [GenomeStudio Genotyping Creating Custom Cluster Files for Infinium Arrays Support Webinar Video](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000006706.md)
- [GenomeStudio Genotyping Evaluating Infinium Assay Controls Support Webinar Video](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008069.md)
- [GenomeStudio Genotyping Introduction Support Webinar Video](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008070.md)
- [Guidelines for Sample Preparation for Infinium Genotyping Assay DNA input](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000002180.md)
- [History of Infinium MethylationEPIC manifest versions](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000002186.md)
- [How to Degas the Te flow Video](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000006689.md)
- [How to Format Sample Sheet for GenomeStudio Genotyping Support Video](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000006950.md)
- [How to Format a Sample Sheet for a GenomeStudio Methylation Project Video](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000007124.md)
- [How to Share BaseSpace Microarray Project Data](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000009052.md)
- [How to avoid sample sheet formatting errors when creating a GenomeStudio project](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001422.md)
- [How to calculate and import LogRDev into a GenomeStudio Project](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001476.md)
- [How to degas the Te flow](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001479.md)
- [How to evaluate the targeted gene amplification (TGA) for Infinium BeadChips with Enhanced PGx Content](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000005491.md)
- [How to filter for or exclude a list of a large number of SNPs in GenomeStudio](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000007467.md)
- [How to generate VCF files from Illumina BeadArray data](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000003079.md)
- [How to generate a Final Report and export a Data Table in GenomeStudio 2011.1 Methylation Module](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008282.md)
- [How to interpret DNA strand and allele information for Infinium genotyping array data](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001489.md)
- [How to properly configure Decode File Client for networks using proxy servers](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000005105.md)
- [How to set up a Private Domain on Illumina Connected Analytics for DRAGEN Array Cloud Analysis](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000005851.md)
- [How to use the Auxiliary File for Infinium BeadChips with Enhanced PGx Content](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008505.md)
- [How to use the PLINK Report Plug in in GenomeStudio](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000003267.md)
- [Infinium Array Best Practices Support Webinar Video](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000006685.md)
- [Infinium Assay CNV Analysis using GenomeStudio or BlueFuse Multi Software Support Webinar Video](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008067.md)
- [Infinium EX Methylation DNA input guidelines and compatible bisulfite conversion kits](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008604.md)
- [Infinium Genotyping Intro to GenomeStudio 2.0 Polyploid Genotyping Module Support Webinar Video](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008064.md)
- [Infinium Genotyping Introduction to Beeline 2.0 and Data Analysis Workflows Support Webinar Video](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000006686.md)
- [Infinium Genotyping Introduction to DesignStudio Microarray Assay Designer Support Webinar Video](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008065.md)
- [Infinium Genotyping Strandology Strand designations in Infinium Manifests Support Webinar Video](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008063.md)
- [Infinium HTS BeadChip Hybridization Loading Patterns for Manual and Automated Protocols](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000002889.md)
- [Infinium Methylation Intro to GenomeStudio and BeadArray Controls Reporter Support Webinar Video](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008062.md)
- [Infinium Methylation450K manifest column headings](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001567.md)
- [Infinium MethylationEPIC v1.0 manifest column headings](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001568.md)
- [Infinium MethylationEPIC v2.0 Manifest Column Headings](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000009183.md)
- [Infinium Mouse Methylation BeadChip GenomeStudio controls interpretation](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000005666.md)
- [Infinium Mouse Methylation Manifest Column Headings](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000005894.md)
- [Infinium Protocol Video](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000005791.md)
- [Infinium genotyping manifest column headings](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001565.md)
- [Infinium基因分型芯片manifest文件中Chr或MapInfo列的值为0时代表什么意思？](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000007313.md)
- [Instructions on how to access and use the Arrays Finder tool](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000010199.md)
- [Manifestology Deciphering Illumina BeadArray Manifests Support Webinar Video](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008060.md)
- [Ordering the HD/LCG/HTS Multi sample Alignment Fixture vs XT/EX Flow through Chamber Assembly Tray](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000009870.md)
- [Port Reset and Power Cycle Sequence for iScan or HiScan, without an AutoLoader](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001492.md)
- [Preparation, storage, and use of 95% Formamide/1 mM EDTA in Infinium Assays](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000002232.md)
- [Preparing a Bleach (Sodium Hypochlorite) Solution for Infinium Workflows](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008297.md)
- [Proper care of IAPS with ILASS robot fluidics](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008439.md)
- [Proper care of Tecan/IAPS with IAC robot fluidics](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001507.md)
- [Recommendations for the Use and Storage of Infinium Array XC4 reagent](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001517.md)
- [Recommended Storage Temperature for Infinium BeadChips (2–8°C)](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000002839.md)
- [Resetting the TeFlow Water Re Circulator Air Filter Alarm](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001518.md)
- [Sample sheet guidelines for GenomeStudio Genotyping and Methylation](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000003223.md)
- [Scan features differences between the iScan and NextSeq 550](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008353.md)
- [Simple guidelines for identifying top/bottom (TOP/BOT) strand and A/B allele](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001521.md)
- [Tecan/IAPS with ILASS Power Cycle Instructions](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008647.md)
- [Tips and tricks for downloading DMAPs using the Decode File Client](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001523.md)
- [Types of reports generated in GenomeStudio Genotyping Module v2.0](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000002861.md)
- [What are the ctl probes in the Infinium Methylation Array manifest?](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000009599.md)
- [What does Chr or MapInfo = 0 mean in Infinium Genotyping Array Manifest Files?](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001423.md)
- [What is the Content Descriptor file in GenomeStudio 2011.1 Methylation Module?](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000003030.md)
- [When to run Reproducibility and Heritability reports with or without error calculation in GenomeStudio](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000009768.md)
- [Where to find Microarray sample quality metrics in DRAGEN Array Cytogenetics and Emedgene](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000009271.md)
- [Where to find required license keys / serial numbers for installation of GenomeStudio 2011.1](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000003536.md)
- [Which Bisulfite Conversion Kit should be used for Infinium Methylation Arrays?](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001524.md)
- [Which files are required and optional when creating a GenomeStudio project?](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000002888.md)
- [Why Multiple Assays May Target the same SNP Marker in BeadArray Manifests](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000002975.md)
- [Why is the DRAGEN Array VCF output for mitochondrial loci showing only 0 or 1 in the GT field?](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000010079.md)
- [XStain glass back plate care recommendations for Infinium EX Assays](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008440.md)
- [所有Infinium 芯片的DMAP文件自生产之日起两年内可下载](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000007140.md)
- [确认TOP/BOT链和A/B等位基因的基本规则](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000007135.md)


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