# Amplicon Library Prep

- [FAQ](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-faq-list.md)
- [Can Illumina and IDT for Illumina DNA/RNA UD Indexes be used with the 16S Metagenomics Protocol?](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-faq-list/000005766.md)
- [Information and protocol for the Illumina 16S Metagenomics Sequencing Library Preparation workflow](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-faq-list/000005774.md)
- [Information and protocol for the Illumina Fungal Metagenomics Sequencing workflow](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-faq-list/000005773.md)
- [Overview of the Fungal Metagenomic Sequencing Demonstrated Protocol](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-faq-list/000005829.md)
- [Reference Material](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-reference_material-list.md)
- [16S library preparation for the MiSeq i100 Series 25M Reagent Kit (1000 cycles)](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-reference_material-list/000010152.md)
- [Amplicon Sequencing Assessing the Success of Your Run Support Webinar Video](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-reference_material-list/000008058.md)
- [How to use Illumina DesignStudio for Custom Sequencing Panels Video](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-reference_material-list/000006951.md)
- [Recommendations for sequencing Illumina 16S libraries with the NextSeq 1000/2000 600 cycle kits](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-reference_material-list/000007461.md)
- [What Does a Typical 16S Run Look Like on a MiSeq?](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-reference_material-list/000007820.md)


---

# Agent Instructions: Querying This Documentation

If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter:

```
GET https://knowledge.illumina.com/library-preparation/amplicon-library-prep.md?ask=<question>
```

The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
