File Paths for the MiniSeq Control Software v2.0

The following are commonly used files and file paths for the MiniSeq.

Temp Run Folder: This folder contains the raw sequencing data output.

• Location: D:\Illumina\MiniSeq Sequencing Temp<run folder>

• Folder structure: (Note: the structure of other output folders is similar.)

  • Configs

  • Data

  • Intensities - BaseCalls * L001 (Base call files, aggregated per cycle) * L001 (An aggregated \*.locs file)

  • Images - Focus * L001 — Focus images (Shows images of clustering on the flow cell prior to cycle 1 of sequencing.)

  • InstrumentAnalyticsLogs (Log files describing instrument analytics steps)

  • InterOp (Binary files used by the Sequencing Analysis Viewer software)

  • Logs (Log files describing operational steps)

  • Recipe (Run-specific recipe file named with reagent cartridge ID)

  • RTALogs (Log files describing analysis steps)

  • RTAComplete.xml (this file is a marker file that indicates RTA processing is complete. The presence of this file triggers Local Run Manager to queue analysis.)_

  • RTAConfiguration.xml

  • RunInfo.xml

  • RunNotes.xml

  • RunParameters.xml

MiniSeq Control Software Logs Folder

• Location: D:\Illumina\MiniSeq Control Software

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