> For the complete documentation index, see [llms.txt](https://knowledge.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000005382.md).

# Troubleshooting Green LED Failed polling LED status error on MiSeq

In MiSeq Control Software v4.X (Win10), some runs may present a notification message: **GreenLED: Failed polling LED status**.

The message typically does not stop the run, nor impact run performance, and is usually due to a communication issue on the instrument.

![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-03facbc87cde458112cceeadf3b132e7775ccc7e%2Fimage1.jpg?alt=media\&token=a76a01c5-21cd-46c7-8cd4-2368e4648616)

**Troubleshooting Steps**:

1. Contact [Illumina Technical Support](https://www.illumina.com/company/contact-us.html#/united-states/technical-support) for instructions on how to upload the compressed folders to a secure FTP site for review.
   1. From within D:\Illumina\MiSeq Temp\[RunFolder]\\\
      InterOp folder\
      RunInfo.xml\
      RunParameters.xml\
      Cycle Logs (found within D:\Illumina\MiSeq Temp\[RunFolder]\Logs)
   2. From within D:\Illumina\MiSeq Control Software\
      Logs folder
2. Power cycle the MiSeq **after** the run completes.
3. If the instrument initializes successfully, continue using it for sequencing and monitor the next run.
4. If the instrument fails to initialize, contact [Illumina Technical Support](https://www.illumina.com/company/contact-us.html#/united-states/technical-support).

For further information, search for Knowledge Base articles [How to Power Cycle the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000001894.md) and [How To Power Cycle the MiSeq Video](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000005871.md).

\
\
\ <br>

|                                                                                                                                                                                                                                                                                                                                                                        |
| :--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------: |
| *For any feedback or questions regarding this article (Illumina Knowledge Article #5382), contact Illumina Technical Support* [*techsupport@illumina.com*](mailto:techsupport@illumina.com?subject=Question%2FFeedback%20Regarding%20Illumina%20Knowledge%20Article%20#000005382%20-%20Instrumentation%20\&body=Dear%20Illumina%20Technical%20Support,%0D%0A%0D%0A)*.* |


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation by asking a question.

Perform an HTTP GET request on the following URL with the `ask` and `goal` query parameters:

```
GET https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000005382.md?ask=<question>&goal=<user_goal>
```

`ask` is the immediate question: it should be specific, self-contained, and written in natural language.
`goal` is what the user is ultimately trying to achieve, the reason they need the answer. Sharing it helps GitBook give you a better, more relevant answer. A goal is most helpful when it describes the outcome the user wants rather than restating the question. For example, with `ask=how do I create an API token`, a goal like `automate deployments from our CI pipeline` lets GitBook tailor the answer to that use case.

The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
