> For the complete documentation index, see [llms.txt](https://knowledge.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-faq-list/000006671.md).

# Which types of sample sheet can be used when analyzing NovaSeq 6000 run data?

Data from the NovaSeq 6000 can be analyzed using either v1 or v2 sample sheets, depending on the analysis pipeline. A v1 sample sheet is required when using bcl2fastq or bcl2fastq2. A v2 sample sheet is required when using BCL Convert, and this requires run setup via Instrument Run Setup (IRS) within BaseSpace Sequence Hub.

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| *For any feedback or questions regarding this article (Illumina Knowledge Article #6671), contact Illumina Technical Support* [*techsupport@illumina.com*](mailto:techsupport@illumina.com?subject=Question%2FFeedback%20Regarding%20Illumina%20Knowledge%20Article%20#000006671%20-%20Instrumentation%20\&body=Dear%20Illumina%20Technical%20Support,%0D%0A%0D%0A)*.* |


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