# Cloud Analysis Errors using Sample Sheet Workflow on the MiSeq i100 Series
**Background**
The MiSeq i100 Series instruments allow users to setup sequencing runs using Sample Sheets through either Run Planning or importing the sample sheet under the Manual Mode option. Only Local Analysis using onboard DRAGEN is available when setting up runs using a Sample Sheet; Cloud Analysis is not available for this setup workflow.
If a Sample Sheet that is configured for Cloud Analysis is used to setup a sequencing run through either Run Planning or importing the sample sheet in Manual Mode, the following errors will present:
*Run Planning*
Cannot import SampleSheet.csv: Fix the following 2 issues in the sample sheet file and try importing again.
*Manual Mode*
This sample sheet is configured for cloud analysis. Select a sample sheet without a cloud configuration.
**Resolution Actions**
The Sample Sheet workflow is only compatible with on-instrument DRAGEN Local Analysis. If the Sample Sheet is configured for Cloud Analysis in BaseSpace, see the following options to correct the **Sample Sheet** and configure the **Cloud Settings** if needed.
*Correcting the Sample Sheet*
1. **Option 1**: Edit the Sample Sheet to remove the\[Cloud\_Settings]section ONLY, leave the \[Cloud\_Data] section in place.
1. Open file in a simple text editor such as Notepad or Text Editor.
2. Do NOT use Excel or other spreadsheet editor as these can modify the comma-separated values.
3. 
2. **Option 2**: Create a new Sample Sheet in BaseSpace and select **Local** under **Secondary Analysis** on the **Run Settings** user interface.
1\.
```
```
2\. Complete the **Run Settings** and **Configuration** workflows, then select **Export** to create a new SampleSheet.csv file.
*Uploading Analysis Files to Cloud Storage*
While the Analysis must be performed locally when using the Sample Sheet workflow, the resulting FASTQ, BAM, or CRAM analysis files can be uploaded to BaseSpace for storage or sharing. See the following steps if this is required:
1. From the Control Software home screen, select the **dropdown menu** in the top-left corner.
2. Open the **Settings** menu and select **Cloud Settings.**
3. Select the checkbox for **Cloud Storage.**
4. Select the checkboxes to upload **FASTQ** and **BAM/CRAM** files as appropriate.
5. Select **Save**.
6. During run setup, login as **BaseSpace** user and then setup sequencing run using **Manual - Sample Sheet** workflow.
7. On **Run Review** page, confirm **Cloud run settings** shows **Run Monitoring and Storage**.
\
\
\
| |
| :--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------: |
| *For any feedback or questions regarding this article (Illumina Knowledge Article #9549), contact Illumina Technical Support* [*techsupport@illumina.com*](mailto:techsupport@illumina.com?subject=Question%2FFeedback%20Regarding%20Illumina%20Knowledge%20Article%20#000009549%20-%20Instrumentation%20\&body=Dear%20Illumina%20Technical%20Support,%0D%0A%0D%0A)*.* |
---
# Agent Instructions: Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.
Perform an HTTP GET request on the current page URL with the `ask` query parameter:
```
GET https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009549.md?ask=
```
The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.
Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.