> For the complete documentation index, see [llms.txt](https://knowledge.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list/000002538.md).

# MiSeq Flow cell compatibility for v2 and v3 reagent kits

The standard MiSeq flow cells are identical in MiSeq v2 and MiSeq v3 sequencing kits.

* If needed, a flow cell from a MiSeq v2 kit can be used with a MiSeq v3 cartridge, or a flow cell from a MiSeq v3 kit can be used with a MiSeq v2 reagent cartridge.
* **Note:** Micro and Nano flow cells are **only** compatible with v2 reagent cartridges.

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| *For any feedback or questions regarding this article (Illumina Knowledge Article #2538), contact Illumina Technical Support* [*techsupport@illumina.com*](mailto:techsupport@illumina.com?subject=Question%2FFeedback%20Regarding%20Illumina%20Knowledge%20Article%20#000002538%20-%20Instrumentation%20\&body=Dear%20Illumina%20Technical%20Support,%0D%0A%0D%0A)*.* |


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