Index selection and FAQ for Illumina DNA PCR Free
Is Illumina DNA PCR-Free compatible with all Illumina indexes kits? Which indexes can be used with Illumina DNA PCR-Free kit?
Illumina DNA PCR free is compatible with the 10 bp IDT for Illumina - DNA/RNA UD Indexes (formerly, the IDT for Illumina Nextera DNA Unique Dual Indexes).
Where are the sequences of adapters, sequencing primers, and indexes used in Illumina PCR-Free library prep?
All publicly available sequences can be found in the Illumina Adapter Sequences Document.
Sequencing primer sequences are proprietary.
How to choose index combinations for libraries if pooling a low number of libraries in a sequencing run?* See the IDT for Illumina-DNA/RNA UD Indexes section of the Index Adapters Pooling Guide for guidance.
See Balancing sample coverage for whole-genome sequencing technical note for approximate expected index representations.
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