Troubleshooting

Software > General > Troubleshooting

• DRAGEN reference differences for on instrument and standalone analysis

• Does the DRAGEN pipeline support VQSR (Variant Quality Score Recalibration)?

• How to troubleshoot a "None of the specified endpoints were reachable" error in Local Run Manager

• Illumina Connected Analytics (ICA) kernel cannot connect in a Bench Workspaces

• Options for demultiplexing libraries with different index lengths in the same sequencing run

• Sample specific nucleotide error bias estimation filter and systematic noise filter in DRAGEN

• Troubleshooting LRM analysis module not available at run start on NextSeq 500/550