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How to import files into a BaseSpace Project using the web Interface

The following file types can be uploaded to projects in BaseSpace Sequence Hub.
  • FASTQ files (\*.fastq.gz),
  • Analysis files (Variant Call Format (VCF) and Genomic Variant Call Format (gVCF)),
  • Manifests (\*.txt),
  • Sample Sheets (.csv),
  • etc.
Note: User must have write access (ownership) of the BaseSpace project.
To upload data via the web interface:
  1. 1.
    Open the BaseSpace project.
  2. 2.
    From the project, select File (the paper icon), then Upload, and then select Files.
  3. 3.
    Select type of files to upload.
Note: Uploading multiple FASTQ, VCF, or manifest files in a single session requires files of the same type.
  1. 1.
    If uploading a FASTQ file, do the following.
    1. 1.
      Select Select Biosample, then select or create a Biosample for the FASTQ file(s).
    2. 2.
      Enter a library name.
    3. 3.
      Select a library prep kit.
    4. 4.
      [Optional] Enter a position name.
    5. 5.
      Select Finish Upload.
  2. 2.
    If uploading a VCF file, do the following.
    1. 1.
      Select Select Biosample, then select or create a Biosample for the VCF(s).
    2. 2.
      Select Finish Upload.
  3. 3.
    If uploading a manifest file, do the following.
    1. 1.
      Select Select Biosample, then select or create a Biosample that the manifest will be associated with.
    2. 2.
      Select Finish Upload.
  4. 4.
    If uploading other file types, do the following. (This option is only available in New mode.)
    1. 1.
      [Optional] Select Select Biosample, then select or create a Biosample that the files will be associated with.
    2. 2.
      Select Finish Upload.
See the Import Files Into a Project help page for additional information.
For any feedback or questions regarding this article (Illumina Knowledge Article #3651), contact Illumina Technical Support [email protected].
Last modified 24d ago
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