How to view files from Illumina Connected Analytics in Integrative Genomics Viewer

1.Install and authenticate ICA command line interface(CLI) to the ICA domain containing the files. Instructions for setting up ICA CLI: https://help.ica.illumina.com/command-line-interface/cli-installation

2.Find the file URL on ICA using the following CLI command:

icav2 projectdata downloadurl <file-ID> --project-id=<project-ID>  

3.Open IGV and go to File > Load from URL.

4.Paste the file URL from the ICA CLI output to the ‘File URL’ section then click ‘OK’.

5.The file should now be viewable within IGV.

For any feedback or questions regarding this article (Illumina Knowledge Article #7465), contact Illumina Technical Support [email protected].