> For the complete documentation index, see [llms.txt](https://knowledge.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list.md).

# Reference Material

Instrumentation > MiSeq > Reference Material

* [How To Power Cycle the MiSeq Video](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000005871.md)
* [How to Denature and Dilute Libraries and Spike in PhiX on the MiSeq Video](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000007462.md)
* [How to Prepare a MiSeq Sequencing Reagent Cartridge Video](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000006670.md)
* [How to Start a Run on the MiSeq Video](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000007463.md)
* [How to configure MiSeq Reporter to use a network location as the default output folder](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000002256.md)
* [How to find sample sheet templates for MiSeq Control Software (MCS) v4.0 Local Run Manager](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000003882.md)
* [How to make sure FASTQ generation occurs in MiSeq Reporter when using BaseSpace for analysis](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000003616.md)
* [How to navigate the MiSeq Self Service Resources tool](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000007446.md)
* [How to prepare low concentration (< 2 nM) libraries for sequencing on a MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000006058.md)
* [How to properly format and use a custom reference genome in MiSeq Reporter](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000002212.md)
* [How to set up a PhiX validation run on MiSeq (using software v2.6 and earlier)](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001884.md)
* [How to set up the sample sheet for a PhiX validation run on the MiSeq using IEM](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001244.md)
* [MiSeq Run Quality and Best Practices Support Webinar Video](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000008040.md)
* [MiSeq Sequencing Reagents Preparation: Flow cell Video](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000006669.md)
* [MiSeq flow cell tiles by flow cell type](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001672.md)
* [MiSeq output and analysis folder quick reference guide](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000005817.md)
* [MiSeq上机测序时如何准备＜2nM 的文库](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000007417.md)
* [Reference images for the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000002700.md)
* [Run folder sizes and Disk Space on the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000006711.md)
* [Sample sheet creation for MiSeq Control Software v2.6 and Earlier](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000002396.md)
* [Technical resources for the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000007486.md)
* [Thumbnail Image naming conventions for the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000003082.md)
* [Upgrading to MiSeq Control Software v4.0](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000005753.md)
* [User supplied consumables for sequencing on the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001675.md)
* [Wash Notifications on the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001448.md)


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter, and the optional `goal` query parameter:

```
GET https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list.md?ask=<question>&goal=<endgoal>
```

`ask` is the immediate question: it should be specific, self-contained, and written in natural language.
`goal` is optional and describes the broader end goal you are ultimately trying to accomplish on behalf of the user. GitBook uses it to tailor the answer towards what is most useful for that goal.

The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
