# Reference Material

Instrumentation > MiSeq > Reference Material

* [Best practices for maintaining the computer on a MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000006708.md)
* [Chemistry and imaging on MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000003757.md)
* [Configuring MiSeq Control Software v4 and MiSeq Reporter to write to Samba Shares on a Linux server](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000002266.md)
* [Consumable Part Numbers for the MiSeq and Total SBS cycles available](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000005842.md)
* [Custom sequencing primers on the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000002414.md)
* [Enabling run storage and analysis in BaseSpace for MiSeq runs](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000003618.md)
* [File paths for the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001678.md)
* [Frequently asked questions about upgrading to MiSeq Control Software v4.0](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000005752.md)
* [How To Power Cycle the MiSeq Video](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000005871.md)
* [How to Create a Sample Sheet in Local Run Manager v2 and v3](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000008106.md)
* [How to Denature and Dilute Libraries and Spike in PhiX on the MiSeq Video](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000007462.md)
* [How to Enable/Disable Illumina Proactive on the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000002412.md)
* [How to Perform Washes on the MiSeq Video](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000006958.md)
* [How to Power Cycle the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001894.md)
* [How to Prepare a MiSeq Sequencing Reagent Cartridge Video](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000006670.md)
* [How to Start a Run on the MiSeq Video](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000007463.md)
* [How to check network settings on the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000002383.md)
* [How to clean the MiSeq flow cell holder](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000003500.md)
* [How to configure MiSeq Reporter to use a network location as the default output folder](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000002256.md)
* [How to find sample sheet templates for MiSeq Control Software (MCS) v4.0 Local Run Manager](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000003882.md)
* [How to generate RFID bypass codes for the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001528.md)
* [How to generate an RFID bypass code in MyIllumina Video](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000005859.md)
* [How to make sure FASTQ generation occurs in MiSeq Reporter when using BaseSpace for analysis](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000003616.md)
* [How to navigate the MiSeq Self Service Resources tool](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000007446.md)
* [How to perform a System Check on the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001777.md)
* [How to prepare low concentration (< 2 nM) libraries for sequencing on a MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000006058.md)
* [How to properly format and use a custom reference genome in MiSeq Reporter](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000002212.md)
* [How to set up a PhiX validation run on MiSeq (using software v2.6 and earlier)](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001884.md)
* [How to set up the sample sheet for a PhiX validation run on the MiSeq using IEM](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001244.md)
* [How to stop and restart RTA on the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000002031.md)
* [Instructions to designate an output location when setting up a run in MiSeq Control Software v2.x](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000003615.md)
* [MiSeq Run Quality and Best Practices Support Webinar Video](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000008040.md)
* [MiSeq Sequencing Reagents Preparation: Flow cell Video](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000006669.md)
* [MiSeq flow cell tiles by flow cell type](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001672.md)
* [MiSeq output and analysis folder quick reference guide](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000005817.md)
* [MiSeq上机测序时如何准备＜2nM 的文库](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000007417.md)
* [Reagent Stability and Thawing Guidelines for MiSeq Sequencing Kits](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001674.md)
* [Recommendations for optimal cluster density and PhiX loading concentrations on the MiSeq System](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001676.md)
* [Reference images for the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000002700.md)
* [Run folder sizes and Disk Space on the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000006711.md)
* [Sample sheet creation for MiSeq Control Software v2.6 and Earlier](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000002396.md)
* [Specifications for the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001670.md)
* [Technical resources for the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000007486.md)
* [Thumbnail Image naming conventions for the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000003082.md)
* [Upgrading to MiSeq Control Software v4.0](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000005753.md)
* [User supplied consumables for sequencing on the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001675.md)
* [Wash Notifications on the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001448.md)
* [Wash best practices for the MiSeq](/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001679.md)


---

# Agent Instructions: Querying This Documentation

If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter:

```
GET https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list.md?ask=<question>
```

The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
