> For the complete documentation index, see [llms.txt](https://knowledge.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003758.md).

# How to move custom recipes using the Linux terminal on the NextSeq 1000/2000

The NextSeq 1000/2000 platforms have the ability to use custom recipes during run setup, though the recipe files will need to be moved into the `/usr/local/illumina/recipes/` directory. This directory is owned by the root superuser within the Linux Operating System (OS), so moving files into there will require terminal access and elevated permissions using the sudo command.

See the following instructions for how to use the terminal to move files into the recipes directory:

1. If currently logged in under the ilmnuser account, exit the Control Software and log out of ilmnuser, then log into the Linux OS as ilmnadmin.
2. As ilmnadmin, download the custom recipe file to the Downloads directory on the instrument.
   1. For ilmnadmin, this will be `/home/ilmnadmin/Downloads`
   2. The custom recipes can be downloaded [here](https://support.illumina.com/sequencing/sequencing_instruments/nextseq-1000-2000/product-files.html).
3. Open the Terminal and input the following commands, pressing **Enter** after each command.
   * `cd /home/ilmnadmin/Downloads`
   * `ls -lh`
   * `sudo mv [recipe_name].xml /usr/local/illumina/recipes/`
     1. Replace `[recipe_name] with the name of the recipe.` The recipe name can be determined from the output of the `ls -lh` command.
     2. When prompted input the ilmnadmin password. **Note:** The cursor will not move even when the password is being typed.
4. Input the `ls -lh /usr/local/illumina/recipes/` command to verify that the recipe file was transferred appropriately.
5. Log out of the ilmnadmin user, then log back into ilmnuser and launch the NextSeq 1000/2000 Control Software.

If there are any issues with moving the recipe files, contact [Illumina Technical Support](https://www.illumina.com/company/contact-us.html#/united-states/technical-support).

\
\
\ <br>

|                                                                                                                                                                                                                                                                                                                                                                        |
| :--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------: |
| *For any feedback or questions regarding this article (Illumina Knowledge Article #3758), contact Illumina Technical Support* [*techsupport@illumina.com*](mailto:techsupport@illumina.com?subject=Question%2FFeedback%20Regarding%20Illumina%20Knowledge%20Article%20#000003758%20-%20Instrumentation%20\&body=Dear%20Illumina%20Technical%20Support,%0D%0A%0D%0A)*.* |


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter, and the optional `goal` query parameter:

```
GET https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003758.md?ask=<question>&goal=<endgoal>
```

`ask` is the immediate question: it should be specific, self-contained, and written in natural language.
`goal` is optional and describes the broader end goal you are ultimately trying to accomplish on behalf of the user. GitBook uses it to tailor the answer towards what is most useful for that goal.

The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
