> For the complete documentation index, see [llms.txt](https://knowledge.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list.md).

# Reference Material

Software > Cloud Software > Reference Material

* [BaseSpace Command Line Tools for Basic Analysis Part I Support Webinar Video](/software/cloud-software/software-cloud-software-reference_material-list/000008080.md)
* [BaseSpace Command Line Tools for Basic Analysis Part II Support Webinar Video](/software/cloud-software/software-cloud-software-reference_material-list/000008082.md)
* [BaseSpace Data Model Explained](/software/cloud-software/software-cloud-software-reference_material-list/000007009.md)
* [BaseSpace Informatics Suite Intro to Cohort Analyzer and Correlation Engine Support Webinar Video](/software/cloud-software/software-cloud-software-reference_material-list/000008089.md)
* [BaseSpace Sequence Hub Introduction and Analysis Overview Support Webinar Video](/software/cloud-software/software-cloud-software-reference_material-list/000008087.md)
* [BaseSpace Sequence Hub informational resources](/software/cloud-software/software-cloud-software-reference_material-list/000002876.md)
* [Enrichment Data Analysis Introduction Support Webinar Video](/software/cloud-software/software-cloud-software-reference_material-list/000008090.md)
* [How to Requeue Analysis for a NextSeq 1000/2000 run using BaseSpace BCL Convert Video](/software/cloud-software/software-cloud-software-reference_material-list/000006955.md)
* [How to Requeue a Run using BaseSpace Sequence Hub Video](/software/cloud-software/software-cloud-software-reference_material-list/000006956.md)
* [How to configure Single Sign On (SSO) for an Illumina Enterprise domain using Entra ID](/software/cloud-software/software-cloud-software-reference_material-list/000005972.md)
* [How to configure Single Sign On (SSO) for an Illumina Enterprise domain using Okta](/software/cloud-software/software-cloud-software-reference_material-list/000006210.md)
* [How to delete a variant with API in Emedgene Curate](/software/cloud-software/software-cloud-software-reference_material-list/000009725.md)
* [How to download FASTQs from specific lanes using Basespace CLI](/software/cloud-software/software-cloud-software-reference_material-list/000006973.md)
* [How to download specific file types when downloading runs from BaseSpace using BaseSpace CLI](/software/cloud-software/software-cloud-software-reference_material-list/000003154.md)
* [How to find the Demultiplexing Summary and SampleSheetUsed in BaseSpace?](/software/cloud-software/software-cloud-software-reference_material-list/000003652.md)
* [How to get started with BaseSpace Command Line Interface (CLI) Video](/software/cloud-software/software-cloud-software-reference_material-list/000005593.md)
* [How to import files into a BaseSpace Project using the web Interface](/software/cloud-software/software-cloud-software-reference_material-list/000003651.md)
* [How to invite users to an Enterprise domain workgroup, via a collaborative Enterprise domain account](/software/cloud-software/software-cloud-software-reference_material-list/000005878.md)
* [How to launch any app in BaseSpace using BaseSpace Command Line Interface (CLI)](/software/cloud-software/software-cloud-software-reference_material-list/000007759.md)
* [How to list BaseSpace entities using BaseSpace CLI](/software/cloud-software/software-cloud-software-reference_material-list/000003682.md)
* [How to manage status.illumina.com subscriptions](/software/cloud-software/software-cloud-software-reference_material-list/000009049.md)
* [How to set the default location for uploaded runs to BaseSpace](/software/cloud-software/software-cloud-software-reference_material-list/000001847.md)
* [How to use the Resources page to add custom reference files for Run Planning for NovaSeq X/X Plus runs](/software/cloud-software/software-cloud-software-reference_material-list/000008500.md)
* [Investigation of Log4j Vulnerability with BaseSpace Sequence Hub (BSSH) Cloud](/software/cloud-software/software-cloud-software-reference_material-list/000006337.md)
* [Investigation of Log4j Vulnerability with Illumina Connected Analytics (ICA)](/software/cloud-software/software-cloud-software-reference_material-list/000006343.md)
* [Panel of Normals TruSight Hereditary Cancer Panel datasets for copy number variations in BaseSpace](/software/cloud-software/software-cloud-software-reference_material-list/000007929.md)
* [RNA Sequencing Part III Introduction to Analysis Support Webinar Video](/software/cloud-software/software-cloud-software-reference_material-list/000008079.md)
* [Reference genome and target regions BED file for the DRAGEN PopGen app](/software/cloud-software/software-cloud-software-reference_material-list/000007889.md)
* [TruSight Oncology 500 version 2 Analysis Overview Support Webinar Video](/software/cloud-software/software-cloud-software-reference_material-list/000008077.md)
* [Which BaseSpace Subscription is needed to process Illumina 3' Single Cell RNA Samples](/software/cloud-software/software-cloud-software-reference_material-list/000009794.md)
* [Which BaseSpace apps and features use Illumina Connected Analytics](/software/cloud-software/software-cloud-software-reference_material-list/000009045.md)
* [使用BaseSpace基因云计算平台和bcl2fastq2 2.17以及以上版本软件时，如何排查拆分异常情况](/software/cloud-software/software-cloud-software-reference_material-list/000007134.md)


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