# Types of reports generated in GenomeStudio

**Types of reports that can be generated in GenomeStudio:**

**A. Final Report:** contains information on the allele calls of the samples.

**Note:** There is an option to select the field/statistic to include in the report.

**Table 1.** Description of Headers available in a Final Report.\
![](/files/0HiOd8wkMmwR7XQygrK9)

**Figure 1.** Final Report Sample.

![](/files/9EcnrpELh1qQnljxDORB)

**B. DNA Report:** contains the summary statistics for each sample.

**Table 2.** Description of Headers in a DNA Report.\
![](/files/uxIlfSsbNw31TS0jU9e3)

**Figure 2.** DNA Report Sample.\
![](/files/3a6SIkHYDjNP04gePuWl)

**C. Locus Summary Report:** contains details for each locus.

**Table 3.** Description of Headers in a Locus Summary Report.\
![](/files/VXaJ5jkeaJPrG4TpW2Eg)

**Figure 3. Locus Summary Report Sample.** ![](/files/6GRGK0pNZ4FXSAp4OGbb)

**D. Locus x DNA Report:** contains details for each locus for each sample.

**Table 4.** Description of Headers in a Locus x DNA Report.\
![](/files/gq9CpWEGy7BL7Fxnc7B6)

**Figure 4**. Locus x DNA Report Sample. ![](/files/Btd23YkwmacQGXZIxONZ)

**E. Custom Reports:** requires the installation of Genome Studio 2.0 Plug-ins before these can be created.\
**GenomeStudio Report Plug-ins** create custom reports for downstream analysis software.\* **PLINK Input report Plug-in**

Output files for input into the PLINK software (.bat, .map, .ped, .phenotype, .script).\
![](/files/DQ3hOta00KCEkdYKZxGH)

* **CNV Region Report**

Requires running cnvPartition Plug-in prior to generating reports. Output is three types of reports.

1. Standard Report: lists each copy number variation and loss of heterozygosity (LOH) region for each sample.

![](/files/S3j33rY7FKlA7A8i8TXt)

2. Allele-Specific Copy Number Report: reports copy number-informed genotypes such as A- and ABB.

![](/files/wbCPfwoVkeQB4sPFrhdu)

3. PLINK CNV Input Report: creates input files for PLINK CNV Analysis Software.

![](/files/xr8nT5zhm782h0s8mf37)

The step-by-step guide on how to generate a report in Genome Studio is described in the [GenomeStudio Genotyping Module v2.0 User Guide](https://support.illumina.com/content/dam/illumina-support/documents/documentation/software_documentation/genomestudio/genomestudio-2-0/genomestudio-genotyping-module-v2-user-guide-11319113-01.pdf).

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| *For any feedback or questions regarding this article (Illumina Knowledge Article #2861), contact Illumina Technical Support* [*techsupport@illumina.com*](mailto:techsupport@illumina.com?subject=Question%2FFeedback%20Regarding%20Illumina%20Knowledge%20Article%20#000002861%20-%20Microarray%20\&body=Dear%20Illumina%20Technical%20Support,%0D%0A%0D%0A)*.* |


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