# Types of reports generated in GenomeStudio

**Types of reports that can be generated in GenomeStudio:**

**A. Final Report:** contains information on the allele calls of the samples.

**Note:** There is an option to select the field/statistic to include in the report.

**Table 1.** Description of Headers available in a Final Report.\
![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-0842bcc012fcff676a632024038dbeba4ebd6bd1%2Fimage1.jpg?alt=media\&token=5c2406e4-d369-4730-b8d9-157705be1a3f)

**Figure 1.** Final Report Sample.

![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-fd99d7a5a7ac2d0bfa575d16875e8f583b8c2f96%2Fimage2.png?alt=media)

**B. DNA Report:** contains the summary statistics for each sample.

**Table 2.** Description of Headers in a DNA Report.\
![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-4562e91afa29d5fa9f8768ea7f3d37c69a823d44%2Fimage3.jpg?alt=media)

**Figure 2.** DNA Report Sample.\
![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-c09f976a386965a8ed84e6749fd8b853efe39acf%2Fimage4.png?alt=media)

**C. Locus Summary Report:** contains details for each locus.

**Table 3.** Description of Headers in a Locus Summary Report.\
![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-aeaaa41b4ae366de46988a9cbfdb3c3669cab270%2Fimage5.jpg?alt=media)

**Figure 3. Locus Summary Report Sample.** ![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-4ff81cd8b3d9d8232f16b090e05fd88295c65b71%2Fimage6.png?alt=media)

**D. Locus x DNA Report:** contains details for each locus for each sample.

**Table 4.** Description of Headers in a Locus x DNA Report.\
![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-a0e33df11894baae9749f51cd5ab5c499457b088%2Fimage7.jpg?alt=media)

**Figure 4**. Locus x DNA Report Sample. ![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-d6574dbab49038a24cf07bda729f14a0c84da50a%2Fimage8.png?alt=media)

**E. Custom Reports:** requires the installation of Genome Studio 2.0 Plug-ins before these can be created.\
**GenomeStudio Report Plug-ins** create custom reports for downstream analysis software.\* **PLINK Input report Plug-in**

Output files for input into the PLINK software (.bat, .map, .ped, .phenotype, .script).\
![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-2511fbc86d0bd437664b5fba1ab4e94f12422e05%2Fimage9.png?alt=media)

* **CNV Region Report**

Requires running cnvPartition Plug-in prior to generating reports. Output is three types of reports.

1. Standard Report: lists each copy number variation and loss of heterozygosity (LOH) region for each sample.

![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-f00032dbcbc475f59ae74328606ffca61f568c92%2Fimage10.png?alt=media)

2. Allele-Specific Copy Number Report: reports copy number-informed genotypes such as A- and ABB.

![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-6b69bec734dd621564d181418e0c5b6d7fd3520e%2Fimage11.png?alt=media)

3. PLINK CNV Input Report: creates input files for PLINK CNV Analysis Software.

![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-75651d8dbc6493db8ad0f578fcefba3a3099ff90%2Fimage12.png?alt=media)

The step-by-step guide on how to generate a report in Genome Studio is described in the [GenomeStudio Genotyping Module v2.0 User Guide](https://support.illumina.com/content/dam/illumina-support/documents/documentation/software_documentation/genomestudio/genomestudio-2-0/genomestudio-genotyping-module-v2-user-guide-11319113-01.pdf).

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