Download links for DRAGEN Reference genome FASTA files

Below links are common FASTA assembly used as baseline assembly to generate different DRAGEN hash tables

hg38 alt-aware with HLAs: https://ilmn-dragen-giab-samples.s3.amazonaws.com/FASTA/hg38.fa or http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/GRCh38_reference_genome/GRCh38_full_analysis_set_plus_decoy_hla.fa

hg38 alt-aware without HLAs: https://ilmn-dragen-giab-samples.s3.amazonaws.com/FASTA/hg38_alt_aware_nohla.fa

hg19: https://ilmn-dragen-giab-samples.s3.amazonaws.com/FASTA/hg19.fa

hs37d5: https://ilmn-dragen-giab-samples.s3.amazonaws.com/FASTA/hs37d5.fa

GRCh37: https://ilmn-dragen-giab-samples.s3.amazonaws.com/FASTA/GRCh37.fa

Reference: https://www.illumina.com/science/genomics-research/articles/dragen-demystifying-reference-genomes.html

For any feedback or questions regarding this article (Illumina Knowledge Article #7409), contact Illumina Technical Support [e-mail].