> For the complete documentation index, see [llms.txt](https://knowledge.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000005603.md).

# Instrument washes required for Illumina sequencing platforms

**Background**\
Many different factors contribute to a successful sequencing run. One important aspect is to make sure that the fluidics lines are thoroughly flushed between sequencing runs to prevent any salt accumulation. It is also important that the fluidics systems are well maintained when the instrument is idle.

For some Illumina sequencing platforms, including the iSeq 100, MiSeq i100 Series, and NextSeq 1000/2000 Series, instrument washes are not required. These systems use sequencing cartridges that contain contain the pumps, valves, and all other fluidics components needed for sequencing, and the cartridges are discarded after each run.

This article outlines the types of washes required, the time needed to complete the wash, and how frequently the respective washes should be performed for all Illumina sequencing instruments.

**Note:** Water and other chemicals used should be lab grade.

**MiSeq system**\
![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-02b60a599c949e51c7743aedac423ef12c0ec4ee%2Fimage1.jpg?alt=media)

Instructions for performing the wash procedures can be found in the [MiSeq System Guide](https://sapac.support.illumina.com/sequencing/sequencing_instruments/miseq/documentation.html).

**MiniSeq and NextSeq 500/550 systems**\
![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-1d9e061a5497b1d47a36c6cf93cb0678a6ae19bc%2Fimage2.jpg?alt=media)

Instructions for performing the wash procedures can be found in the [MiniSeq System Guide](https://sapac.support.illumina.com/downloads/miniseq-system-guide-1000000002695.html), [NextSeq 500 and NextSeq 550 Sequencing System Guide](https://support.illumina.com/downloads/nextseq-500-550-systems-product-documentation.html).

**NovaSeq 6000 system**\
![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-5985414a6caef0aba6702a2e0e942baf0457eb19%2Fimage3.jpg?alt=media)

Instructions for performing the wash procedure can be found in the [NovaSeq 6000 System Guide](https://sapac.support.illumina.com/downloads/novaseq-6000-system-guide-1000000019358.html).

**NovaSeq X Series systems**\
![](https://761066130-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FGM9W2DuBTgEXv1ClCm8H%2Fuploads%2Fgit-blob-cd00a33118cedad48d67e512ef1363523ba9ef62%2Fimage4.jpg?alt=media)

Instructions for performing the wash procedure can be found in the [NovaSeq X Series Product Documentation](https://support.illumina.com/downloads/novaseq-x-novaseq-x-plus-product-documentation.html).

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| *For any feedback or questions regarding this article (Illumina Knowledge Article #5603), contact Illumina Technical Support* [*techsupport@illumina.com*](mailto:techsupport@illumina.com?subject=Question%2FFeedback%20Regarding%20Illumina%20Knowledge%20Article%20#000005603%20-%20Instrumentation%20\&body=Dear%20Illumina%20Technical%20Support,%0D%0A%0D%0A)*.* |


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