Article 000006991

FastQ Generation/BCL Convert appsessions can be filtered based on the Run IDs of the runs used as inputs to these analyses, as follows.

bs appsession list --input-run=[input Run ID]

This can be used in combination with the bs appsession download command to download FastQ files output by an analysis, as follows.

bs appsession list --input-run=[input Run ID] --terse | xargs -I @ bs download appsession -i @ -o [Local Output folder] --extension=fastq.gz

If there are multiple appsessions associated with a run, fields such as ExecutionStatus or DateCreated can be used to filter them out, as follows.

bs appsession list --input-run=[input Run ID] --terse --exec-status=Complete | xargs -I @bs download appsession -i @ -o [Local Output folder] --extension=fastq.gz

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