Reference Material

Software > General > Reference Material

• Adapter trimming Why are adapter sequences trimmed from only the 3' ends of reads

• BaseSpace FASTQ Processing Tools for Data Analysis Support Webinar Video

• FASTQ files explained

• FASTQ文件解读

• Generating checksums for a file

• Guidelines for reverse complementing i5 sequences for demultiplexing

• How to avoid Ns in small RNA or short reads when running BCL Convert

• How to convert a custom BED file to a manifest file for enrichment analysis

• How to realign a CRAM file to a new reference with DRAGEN

• How to set OverrideCycles values for variable index sequence lengths on the NovaSeq X/X Plus

• How to unlock BioSamples in BaseSpace using BaseSpace Command Line Interface (CLI)

• How to use Exome 2.5 Panel of Normals reference for germline deletion/duplication analysis

• Illumina DRAGEN Bio IT Platform What is new with version 3.10 updates Support Webinar Video

• Illumina DRAGEN Bio IT Platform What is new with version 3.9 updates Support Webinar Video

• Illumina DRAGEN Bio IT Platform Ultra Rapid Analysis of Next Generation Data Support Webinar Video

• Illumina DRAGEN Bio IT Platform What is new with version 3.5 updates Support Webinar Video

• Illumina DRAGEN Bio IT Platform What is new with version 3.6 updates Support Webinar Video

• Illumina DRAGEN Bio IT Platform What is new with version 3.7 Support Webinar Video

• Illumina DRAGEN Bio IT Platform What is new with version 3.8 updates Support Webinar Video

• Illumina DRAGEN v4.0 Unlock the Full Potential of Genomics Support Webinar Video

• Information on leading r for UMIs when demultiplexing NextSeq 1000/2000 or NovaSeq X series data with BCL Convert

• Instructions on how to restart run upload to BaseSpace using BaseSpace Broker

• Investigation of Log4j Vulnerability status for Illumina off instrument software products

• Investigation of Log4j Vulnerability with the Illumina DRAGEN Bio IT Platform

• Investigation of Log4j Vulnerability

• Maximum number of cycles for index reads on the NovaSeq X/X Plus

• Metagenomic Sequencing Introduction to Data Analysis Support Webinar Video

• NextSeq 1000/2000 Introduction to Analysis with DRAGEN Support Webinar Video

• Sequencing Data Analysis Introduction to Key Concepts Support Webinar Video

• Trimming T overhang options for Illumina Stranded mRNA and Illumina Stranded Total RNA workflows

• TruSight Oncology 500 Assays and Analysis Options

• Upgrading from bcl2fastq to BCL Convert

• Using an N wildcard in index sequences in different Illumina FastQ generation software

• Why is allowing mismatches when demultiplexing desirable?