How to Include Only Selected SNPs in a Final Report in a GenomeStudio Genotyping Project

How to include only selected SNPs in a Final Report in a GenomeStudio Genotyping Project

1. In the Full Data or SNP Table, select the SNPs to be included in the Final Report.

2. Right-click the selected SNPs and select Show Only Selected Rows. This applies a filter and displays only the selected SNPs in the table.

Figure 1. Selection of Show Only Selected Rows to display only the SNPs to be included in the Final Report.

1. Navigate to Analysis > Reports > Report Wizard.

Figure 2. Navigation to the Report Wizard to configure the Final Report export options.

1. Select Final Report, click Next and proceed through the Report Wizard until the Report Wizard - Included SNPs window appears. Select Remove SNPs that are not visible (Figure 1).

Figure 3. Report Wizard - Included SNPs window.

1. Continue through the Report Wizard and select desired parameters on the Report Wizard - Final Report Format screen.

2. Select Next, browse to the desired Output path, and enter a file name for the report.

3. Select Finish. GenomeStudio exports data only for the SNPs that were selected and visible in the filtered table.

Notes:

• To export a DNA Report after generating the Final Report, clear the filter in the Full Data Table or SNP Table to ensure that all the SNPs are included in the call rate calculations.

• Alternatively, in the Report Wizard - Included SNPs window (Figure 1), select Include all SNPs in the report, regardless of whether or not they are visible at the step shown in Fig 1.

References:

• GenomeStudio Software 2.0 User Guides.

• Types of reports generated in GenomeStudio Genotyping Module v2.0.

For any feedback or questions regarding this article (Illumina Knowledge Article #5451), contact Illumina Technical Support [e-mail].