> For the complete documentation index, see [llms.txt](https://knowledge.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000002861.md).

# Types of reports generated in GenomeStudio Genotyping Module v2.0

The GenomeStudio Genotyping Module v2.0 Report Wizard enables the generation of several report types:\* Final Report

* DNA Report
* Locus Summary Report
* Locus x DNA Report
* Custom Reports

Brief descriptions of each report type and its contents are provided below.

**Types of reports generated in GenomeStudio v2.0**

**Final Report**

The Genotyping Module Final Report contains information on the allele calls of the samples. There is an option to select the field/statistic to include in the report.

**Table 1**. Description of Headers available in a Final Report.\
![](/files/0HiOd8wkMmwR7XQygrK9)

The Genotyping Module produces a Final Report in a text (.txt) or comma-separated valued (.csv) file format.

![](/files/9EcnrpELh1qQnljxDORB)

**Figure 1**. **Final Report Sample.**

**DNA Report**The DNA Report contains the summary statistics for each sample.

**Table 2**. Description of Headers in a DNA Report.\
![](/files/uxIlfSsbNw31TS0jU9e3)\
The Genotyping Module produces a DNA Report in a comma-separated valued (.csv) file format.

![](/files/3a6SIkHYDjNP04gePuWl)\
**Figure 2**. DNA Report Sample.

**Locus Summary Report** The Locus Summary Report contains details for each locus.

**Table 3**. Description of Headers in a Locus Summary Report.\
![](/files/VXaJ5jkeaJPrG4TpW2Eg)

The Genotyping Module produces a Locus Summary Report in a comma-separated valued (.csv) file format.

![](/files/6GRGK0pNZ4FXSAp4OGbb)

**Figure 3**. Locus Summary Report Sample.\
**Locus x DNA Report** The Locus x DNA Report contains details for each locus for each sample.

**Table 4**. Description of Headers in a Locus x DNA Report.\
![](/files/gq9CpWEGy7BL7Fxnc7B6)

The Genotyping Module produces a Locus x DNA Report in a comma-separated valued (.csv) file format. ![](/files/Btd23YkwmacQGXZIxONZ)

**Figure 4**.Locus x DNA Report Sample.

**Custom Reports**This report type requires installation of GenomeStudio v2.0 plug-ins, which are available for download from the [GenomeStudio 2.0 Plug-ins page](https://support.illumina.com/downloads/genomestudio-2-0-plug-ins.html) and enable creation of custom reports for downstream analysis software.\
**GenomeStudio 2.0 Plug-ins** **PLINK Input Report Plug-in**

![](/files/DQ3hOta00KCEkdYKZxGH)

**Figure 5**. Output files for input into the PLINK software (.bat, .map, .ped, .phenotype, .script).

**CNV Region Report**

The CNV Region Report requires running cnvPartition Plug-in prior to report generation and produces three report types.

**Standard Report**: Lists each copy number variation and loss of heterozygosity (LOH) region for each sample.

![](/files/S3j33rY7FKlA7A8i8TXt)

**Figure 6**. Example of Standard Report.

**Allele-Specific Copy Number Report**: Reports copy number-informed genotypes such as A- and ABB.

![](/files/wbCPfwoVkeQB4sPFrhdu)

**Figure 7**. Example of Allele-Specific Copy Number Report.

**PLINK CNV Input Report**: Creates input files for PLINK CNV Analysis Software.

![](/files/xr8nT5zhm782h0s8mf37)

**Figure 8**. Example of PLINK CNV Input generated files.

**Reference**:

[GenomeStudio Genotyping Module v2.0 User Guide](https://support.illumina.com/content/dam/illumina-support/documents/documentation/software_documentation/genomestudio/genomestudio-2-0/genomestudio-genotyping-module-v2-user-guide-11319113-01.pdf) describes the step-by-step guide on how to generate a report in Genome Studio.

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| *For any feedback or questions regarding this article (Illumina Knowledge Article #2861), contact Illumina Technical Support* [*techsupport@illumina.com*](mailto:techsupport@illumina.com?subject=Question%2FFeedback%20Regarding%20Illumina%20Knowledge%20Article%20#000002861%20-%20Microarray%20\&body=Dear%20Illumina%20Technical%20Support,%0D%0A%0D%0A)*.* |


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