# Illumina Knowledge

## Illumina Knowledge

- [Illumina Knowledge](https://knowledge.illumina.com/readme.md)
- [What's New](https://knowledge.illumina.com/whats_new.md)
- [Announcements](https://knowledge.illumina.com/announcements.md)
- [Cloud Status](https://knowledge.illumina.com/cloud-status.md)
- [General](https://knowledge.illumina.com/instrumentation/general.md)
- [FAQ](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list.md)
- [Are the RFID tags for the flow cell and reagent cartridge linked?](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000002528.md)
- [Can secondary analysis run on MiSeq while a run is in progress?](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000002604.md)
- [Differences in the percent clusters passing filter on patterned and non patterned flow cells](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000007457.md)
- [How is PhiX alignment calculated by RTA (Real Time Analysis)?](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000005576.md)
- [How to Check When a Windows Password Was Last Updated or When It Will Expire](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000003269.md)
- [How to determine the appropriate kit configuration to use based on the data needed?](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000006622.md)
- [Illumina reagent shipment packaging FAQs](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000008401.md)
- [Is it possible to remove a library pool from a sequencing reagent cartridge?](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000007771.md)
- [Operating System (OS) versions on Illumina platforms](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000006353.md)
- [Procedures for cleaning flow cells for Illumina sequencers](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000005147.md)
- [Reagent Expiration Date Definition](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000007148.md)
- [Secure communication protocols on Illumina systems](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000008965.md)
- [Steps if insufficient wash solution was used in a manual wash on the NextSeq 500/550 or MiniSeq](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000003047.md)
- [What are Illumina's Qualification Service Offerings](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000007027.md)
- [What files are required to view a run in Sequencing Analysis Viewer (SAV)?](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000003234.md)
- [What is the difference between NextSeq PhiX Control Kit and PhiX Control v3?](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000002925.md)
- [What is the maximum Sample ID length?](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000003631.md)
- [Where to find the date of manufacture of Illumina instruments?](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000008548.md)
- [Which sequencers use patterned vs. nonpatterned flow cells?](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000007786.md)
- [Windows 10 Upgrade for Illumina Instruments FAQ](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-faq-list/000002247.md)
- [Reference Material](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list.md)
- [Antivirus recommendations for Illumina sequencing instruments](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000002278.md)
- [Approximate sizes of sequencing run output folders](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001508.md)
- [Best Practices for Washes on the MiSeq](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001679.md)
- [Best practices for getting the lab back up and running after an extended shutdown](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000003153.md)
- [Best practices for low diversity sequencing on the NextSeq 500/550 and MiniSeq systems](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000002882.md)
- [Best practices for maintaining and cleaning Illumina sequencing system wash cartridges](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000005283.md)
- [Best practices for maintaining the computer on Illumina sequencing systems](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000005253.md)
- [Bluekeep and DejaBlue two vulnerabilities of the Remote Desktop Protocol within Microsoft Windows](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001933.md)
- [Calculating Percent Passing Filter for Patterned and Nonpatterned Flow Cells](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000006309.md)
- [Cluster density guidelines for Illumina sequencing platforms using non patterned flow cells](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001511.md)
- [Configuring User Security Questions on the MiSeq i100 and NovaSeq X Series Platforms](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000010191.md)
- [Decontaminating Illumina instruments for novel coronavirus (2019 nCoV)](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000002376.md)
- [Diagnosing Suboptimal Clustering in Non patterned Flow Cells Video](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000005788.md)
- [Diagnosing Suboptimal Clustering in Patterned Flow Cells Video](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000005789.md)
- [Does my sequencing run look good?](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001922.md)
- [End of Life (EOL) Sale and Support of the MiSeq RUO, MiniSeq and iSeq 100 Systems and Consumables](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000009536.md)
- [End to end sequencing and microarray training at Illumina Solutions Centers in the Americas](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000008977.md)
- [Features of Illumina Advantage (IA former TG) product](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000005173.md)
- [Focus images on the MiniSeq and NextSeq 500/550](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000006325.md)
- [Hard drives and computer information of the MiniSeq](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000002013.md)
- [Heat output specifications for Illumina sequencers](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000008388.md)
- [How Do I Prepare for My Illumina Instrument Delivery? Video](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000005767.md)
- [How many cycles of SBS chemistry are in my kit?](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007002.md)
- [How much PhiX spike in is recommended when sequencing low diversity libraries on Illumina platforms?](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001527.md)
- [How to Clean Illumina Sequencer Wash Cartridges Video](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000006608.md)
- [How to Create a Sample Sheet in Local Run Manager](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000008106.md)
- [How to Disable Cloud Login Feature on the MiSeq i100 and NovaSeq X Series](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000009462.md)
- [How to Enable/Disable Illumina Proactive on the MiSeq](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000002412.md)
- [How to Enable/Disable Illumina Proactive on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000008507.md)
- [How to Export Logs on the MiSeq i100 and NovaSeq X Series Instruments](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000009265.md)
- [How to Perform Washes on the MiSeq Video](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000006958.md)
- [How to Power Cycle the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001972.md)
- [How to Power Cycle the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000002470.md)
- [How to Requeue an Analysis on BaseSpace Sequence Hub When No Changes to the Sample Sheet are Needed](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000008380.md)
- [How to achieve more consistent cluster density on Illumina sequencing platforms](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001481.md)
- [How to add Illumina to TeamViewer allowlist](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000003777.md)
- [How to cache credentials for access to Network Storage and verify Read/Write access](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007828.md)
- [How to change the Windows account type from administrator to standard](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007827.md)
- [How to check .NET version on Windows instruments](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007801.md)
- [How to check if a Windows account is a standard or administrator account](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007826.md)
- [How to collect Group Policy Object (GPO) reports](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000002273.md)
- [How to connect benchtop instruments and Local Run Manager to a network location](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001934.md)
- [How to disable and add exceptions to the Software Restriction Policies for TeamViewer in Windows 10](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000006523.md)
- [How to identify the IP and MAC address of a sequencing instrument](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000002222.md)
- [How to identify the UNC path of a network server or location.](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000002274.md)
- [How to import a pre existing index kits into Local Run Manager v3 and v4](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000008929.md)
- [How to interpret clusters passing filter in run metrics](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000006529.md)
- [How to invite users to a workgroup on BaseSpace Sequence Hub (Professional or Enterprise tier)](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000002874.md)
- [How to make sure Universal Copy Service is configured to Log On as a standard (non admin) account](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007852.md)
- [How to prepare instruments for Natural Disasters](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000003018.md)
- [How to recover passwords for Control Software accounts on the MiSeq i100 and NovaSeq X Series Instruments](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007773.md)
- [How to requeue a NextSeq 1000/2000 run locally (on the instrument)](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000005816.md)
- [How to requeue and import run data for reanalysis with Local Run Manager](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001324.md)
- [How to restart a sequencer after a power outage?](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000006975.md)
- [How to set up a PhiX validation run with Local Run Manager](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001318.md)
- [How to thaw and store sequencing reagents for optimal performance](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001533.md)
- [How to update Network Credentials in Windows Credential Manager on Windows 10 Platforms](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000010020.md)
- [How to update Windows 10 account credentials on Benchtop Instruments](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001932.md)
- [IT Requirements for Implementing Illumina Proactive Video](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000005749.md)
- [Illumina 测序平台的最大读长](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007102.md)
- [Illumina测序平台上每个测序步骤的运行时间预测](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007137.md)
- [Illumina测序平台测试Run中PhiX的上机浓度](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007139.md)
- [Illumina测序系统废液中甲酰胺的终浓度是多少？](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007131.md)
- [Illumina非Pattern Flow Cell测序平台簇密度推荐指南](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007415.md)
- [Impact of ammonium based cleaning products on sequencing run performance](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001846.md)
- [Index color balancing for XLEAP SBS reagents on the NextSeq 1000/2000 and NovaSeq X Series](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000008422.md)
- [Index color balancing for the NextSeq 500/550 and MiniSeq systems](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001241.md)
- [Installing Reference Genomes on NovaSeq X Series Control Software v1.4](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000010233.md)
- [Instructions for thawing and storing NextSeq 500/550 reagents](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001974.md)
- [Instrument Service Contract Plans](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000003016.md)
- [Instrument maintenance and shutdown procedures for extended site closures](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000002336.md)
- [Introducing TeamViewer for Remote Desktop Share with Illumina Support Teams](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000003599.md)
- [Introduction to Illumina Sequencing By Synthesis Support Webinar Video](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007983.md)
- [Investigation of Log4j Vulnerability with Illumina instruments](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000006291.md)
- [Loading concentration considerations when migrating Illumina libraries between sequencing platforms](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001509.md)
- [Maximum read length for Illumina sequencing platforms](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000002826.md)
- [Network Output Path Requirements in Local Run Manager and Universal Copy Service](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000003683.md)
- [NextSeq 500/550和MiniSeq测序系统上index混合的指导方针](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007297.md)
- [NextSeq500/550和Miniseq平台进行低多样性文库测序的最佳操作](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007110.md)
- [PhiX Indexed Control (1000 Cycle) Product Information](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000009867.md)
- [PhiX loading concentrations for validation runs on Illumina sequencing platforms](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001536.md)
- [Plotting %Occupied by %PF to optimize loading for the NovaSeq X Series, NovaSeq 6000, MiSeq i100 Series, and iSeq 100](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000002308.md)
- [Plotting %Occupied by %Pass Filter to optimize loading for the NovaSeq 6000 and iSeq 100 Video](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000005858.md)
- [Quality Scores for Next Generation Sequencing](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000006557.md)
- [Reagent Stability and Thawing Guidelines for MiSeq Sequencing Kits](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001674.md)
- [Run time estimates for each sequencing step on Illumina sequencing platforms](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001540.md)
- [Security updates to address Windows Print Spooler Remote Code Execution Vulnerability](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007489.md)
- [Sequencing Analysis Viewer (SAV) A Beginner's Guide Support Webinar Video](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007985.md)
- [Sequencing Considerations for Low Diversity Samples Support Webinar Video](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007984.md)
- [Serial number locations on Illumina sequencers](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000006351.md)
- [Sharing instrument performance data with Illumina Technical Support](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000003400.md)
- [Shelf life for Illumina reagent products](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000003270.md)
- [Troubleshooting "Cannot initiate communication with Universal Copy Service" error](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007067.md)
- [Troubleshooting "Could not find a part of the path" errors on the NextSeq500/550 and MiniSeq](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000009036.md)
- [Uninterruptible Power Supply (UPS) Models by Instrument](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000005838.md)
- [Updating the Hostname or Domain Name on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000009720.md)
- [Using the MyIllumina dashboard to view instrument yield, Reads PF, and Q30 data as trends over time](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000002125.md)
- [Washes on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000002484.md)
- [What is nucleotide diversity and why is it important?](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001543.md)
- [What is the final formamide concentration in the waste solution of Illumina sequencing systems?](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001544.md)
- [Why sequencing 26 or more cycles in Read 1 is recommended](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000001891.md)
- [Windows 10 support and timelines for Illumina sequencing and array instrument computers](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000009668.md)
- [为什么Read1测序读长推荐至少需要26个循环？](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007114.md)
- [什么是核苷酸多样性，它为什么十分重要？](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007132.md)
- [在Illumina平台进行低多样性文库测序时，应该掺入多少PhiX？](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007399.md)
- [场地长期关闭或仪器长期不用时illumina仪器的维护与关机程序](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007310.md)
- [如何在Illumina测序平台上获得更稳定的簇密度](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007398.md)
- [如何更新UCS和LRM在Windows10系统中的凭据](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007099.md)
- [我所购买的SBS试剂盒最多能够满足多少个循环的测序？](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007400.md)
- [测序运行输出文件夹的近似大小](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007109.md)
- [通过% Occupied和% Pass Filter散点图优化NovaSeq 6000和X、MiSeq i100和iSeq 100上样浓度](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000007138.md)
- [Troubleshooting](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list.md)
- [AWS deprecation of TLS below v1.2 & impact to instruments connecting to Illumina Connected Services](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000008467.md)
- [How to Troubleshoot a "no base calls are available for its lane(s)" error in Local Run Manager](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000009398.md)
- [How to change sbsuser login credentials from the sbsadmin account on Windows instruments](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000006201.md)
- [How to requeue analysis using only an index 2 (i5) read](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000008023.md)
- [How to restart Universal Copy Service when a run is stuck as uploading to BaseSpace Sequence Hub](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000001808.md)
- [How to safely remove or eject external hard drives on Illumina platforms with Windows 10](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000005658.md)
- [How to troubleshoot a Database Backup Secret has not been set warning in Local Run Manager](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000009146.md)
- [How to troubleshoot spent reagent cartridge not detected on NextSeq 500/550](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000001689.md)
- [How to troubleshoot unable to measure flow rate errors on the MiSeq](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000001431.md)
- [Investigating Network Data Copy Performance from Illumina Products on Linux OS](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000008307.md)
- [NovaSeq 6000 Control Software (NVCS) initialization failed at 93% (NVCS 1.7) or 92% (NVCS 1.5, 1.6)](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000001855.md)
- [Optimizing Cluster Density Support Webinar Video](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000007982.md)
- [Re use of sequencing consumables after pre run check failures](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000009623.md)
- [Supported versions of Server Message Block (SMB) on Illumina Platforms](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000006374.md)
- [System error detected please power cycle and perform system checks error on the iSeq 100](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000001367.md)
- [Troubleshooting "Failed to communicate with RTA after 4 attempts" on the MiniSeq or NextSeq 500/550](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000009020.md)
- [Troubleshooting "Insufficient Resource Permissions" when uploading runs with BaseSpace CLI](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000003377.md)
- [Troubleshooting 'Recipe file does not exist at' errors when setting up 1.5B runs on the NovaSeq X Plus](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000008536.md)
- [Troubleshooting BaseSpace Connectivity Issues on Illumina Sequencing Instruments](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000002250.md)
- [Troubleshooting Bit Error on the NextSeq 500/550 and MiniSeq](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000006684.md)
- [Troubleshooting Control Software stuck "Waiting for Safe State" on MiniSeq and NextSeq 500/550](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000008474.md)
- [Troubleshooting Green LED Failed polling LED status error on MiSeq](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000005382.md)
- [Troubleshooting HTTP 503 Error when trying to access LRM after a Windows Credential Update](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000005988.md)
- [Troubleshooting Issues during Instrument Shutdown on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000009032.md)
- [Troubleshooting Lane Pump Errors on the MiSeq](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000001446.md)
- [Troubleshooting MiSeq Read 2 low intensity and quality scores](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000006633.md)
- [Troubleshooting Runs not Uploading to Cloud on the NovaSeq X and MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000009461.md)
- [Troubleshooting SIPDOWN Errors on the MiSeq](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000001456.md)
- [Troubleshooting Windows OS Crashes or Blue Screen Errors on Illumina Instruments](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000001447.md)
- [Troubleshooting a blank BaseSpace screen or The request timestamp is in the future during run setup](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000007471.md)
- [Troubleshooting low disk space issues in the /var/log/ volume on NextSeq 1000/2000 and NovaSeq X Series](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000006273.md)
- [Troubleshooting spent reagent cartridge is full on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000001392.md)
- [Troubleshooting unable to login to Windows based sequencing system](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000006307.md)
- [What to do if the NovaSeq 6000 flow cell cannot be loaded during run setup?](https://knowledge.illumina.com/instrumentation/general/instrumentation-general-troubleshooting-list/000003277.md)
- [iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100.md)
- [Reference Material](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list.md)
- [Air Filter replacement on the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000001882.md)
- [Chemistry and Imaging on iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000008434.md)
- [Consumable Catalog Numbers for the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000002119.md)
- [Custom primer use workflow for iSeq 100 control software version 3.0](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000006250.md)
- [File Paths on the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000002287.md)
- [How To Enable/Disable Illumina Proactive on iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000002292.md)
- [How to Perform a System Check on the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000002298.md)
- [How to Power Cycle the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000002289.md)
- [How to clear hard drive space on the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000006672.md)
- [How to enable Wi Fi on the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000002258.md)
- [Installing and using Local Run Manager Modules on the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000002295.md)
- [Instructions for installing the iSeq Control Software](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000002260.md)
- [Library loading concentration considerations for the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000002121.md)
- [Reagent stability and thawing for the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000002118.md)
- [Reference images for iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000002709.md)
- [Resources for iSeq 100 Control Software v3.0](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000006125.md)
- [Software Restriction Policy (SRP) on the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000003722.md)
- [Software update best practices on the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000006675.md)
- [Specifications for the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000002117.md)
- [Step by step instructions for sequencing library QC with the iSeq 100 System](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000002698.md)
- [Technical resources for the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000002345.md)
- [Troubleshooting initialization failed because the API key is blank error the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000002261.md)
- [Troubleshooting running low diversity samples with low PhiX spike in on the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000001369.md)
- [User accounts for the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000002283.md)
- [iSeq 100 Introduction Support Webinar Video](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000008066.md)
- [iSeq 100 Run Quality and Best Practices Support Webinar Video](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000008068.md)
- [iSeq 100 Sequencing System: Support Resources Video](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000005768.md)
- [iSeq 100 Sequencing System: Troubleshooting and Support Video](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-reference_material-list/000005777.md)
- [Troubleshooting](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-troubleshooting-list.md)
- [Blank BaseSpace login screen during run setup in control software on the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-troubleshooting-list/000002611.md)
- [Clustering failures on the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-troubleshooting-list/000001374.md)
- [Flow cell heater is out of specification error on an iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-troubleshooting-list/000001783.md)
- [How to identify when an air filter was changed on the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-troubleshooting-list/000006288.md)
- [Restore to Factory Settings Option on iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-troubleshooting-list/000001370.md)
- [Troubleshooting "GenerateFASTQ 500 Internal Server Error" in Local Run Manager hosted on the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-troubleshooting-list/000009035.md)
- [Troubleshooting "Initialization failed due to a software connectivity problem" on the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-troubleshooting-list/000005802.md)
- [Troubleshooting Black Chromium Screen on the iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-troubleshooting-list/000007019.md)
- [Troubleshooting iSeq 100 pre run check “Insufficient disk space/Not enough space on D:\” error](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-troubleshooting-list/000003184.md)
- [Troubleshooting unable to locate D:\ drive or cartridge failed to unload error on iSeq 100](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-troubleshooting-list/000005647.md)
- [iSeq 100 unable to connect to BaseSpace due to Proxy server issues](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-troubleshooting-list/000002264.md)
- [FAQ](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list.md)
- [Are custom primers loaded as a pool or individually on the iSeq 100?](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list/000006504.md)
- [Are custom primers recoverable after loading into the iSeq 100 reagent cartridge?](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list/000006505.md)
- [Are washes required on the iSeq 100?](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list/000006673.md)
- [Can Local Run Manager be used to plan iSeq 100 runs with custom sequencing primers?](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list/000006500.md)
- [Can custom sequencing primers be used on the iSeq 100?](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list/000006499.md)
- [Can iSeq 100 runs with custom primers be analyzed in Local Run Manager or BaseSpace Sequence Hub?](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list/000006507.md)
- [Does Illumina offer Preventative Maintenance (PM) for iSeq 100 system?](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list/000005123.md)
- [Does the iSeq 100 have any special moving considerations?](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list/000002316.md)
- [How many runs can be stored on the iSeq 100?](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list/000003060.md)
- [How much liquid waste is inside an iSeq 100 cartridge?](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list/000006977.md)
- [How to determine whether custom primers were selected on the iSeq 100 once the run is completed?](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list/000006506.md)
- [How to dilute custom primers for use on the iSeq 100?](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list/000006503.md)
- [How to dispose of iSeq 100 reagents?](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list/000005122.md)
- [How to minimize the iSeq 100 Control Software?](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list/000006805.md)
- [How to turn audio on or off on the iSeq 100?](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list/000003271.md)
- [Lifespan and maximum usage of the iSeq 100 System test kit](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list/000007573.md)
- [What are the available run setup modes for iSeq 100?](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list/000005570.md)
- [What does the iSeq 100 status bar color mean?](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list/000006208.md)
- [When do %>Q30 and %Pass Filter metrics become available for iSeq 100 runs?](https://knowledge.illumina.com/instrumentation/iseq-100/instrumentation-iseq-100-faq-list/000006806.md)
- [MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq.md)
- [FAQ](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-faq-list.md)
- [Can Flow Cell Registration be Disabled for Pre Run Checks on the MiniSeq?](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-faq-list/000007988.md)
- [Can Sequencing Analysis Viewer be used with the MiniSeq System to view sequencing metrics?](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-faq-list/000007046.md)
- [Run setup modes for the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-faq-list/000005571.md)
- [What does MiniSeq status bar color mean?](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-faq-list/000006207.md)
- [What is the maximum read length supported in one direction on a MiniSeq run?](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-faq-list/000007045.md)
- [Which controls should be used when sequencing low diversity libraries on a MiniSeq?](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-faq-list/000007047.md)
- [Reference Material](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list.md)
- [Consumable catalog numbers and total SBS cycles available for the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000002018.md)
- [Custom primers on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000002029.md)
- [Enabling saving Thumbnail Images on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000002032.md)
- [Estimated time for sequencing steps on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000002009.md)
- [File Paths for the MiniSeq Control Software v2.0](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000002378.md)
- [How to Perform a System Check on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000002040.md)
- [How to Power Cycle the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000002010.md)
- [How to enable/disable Illumina Proactive on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000002549.md)
- [How to install custom recipes on MiniSeq Control Software v2.x](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000006617.md)
- [How to perform a System Check on the MiSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000001777.md)
- [Introducing the MiniSeq Rapid Reagent Kit](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000003743.md)
- [Low diversity sequencing on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000002036.md)
- [MiniSeq Introduction Support Webinar Video](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000008061.md)
- [MiniSeq Reagent Kit Component Dimensions](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000007295.md)
- [MiniSeq system components overview](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000002014.md)
- [Pre run checks on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000003892.md)
- [Saved thumbnail options and how thumbnail images are named on MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000003081.md)
- [Specifications for the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000002002.md)
- [Thawing and Stability Guidelines for MiniSeq Reagent Kits](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000002004.md)
- [Upgrading to MiniSeq Control Software v2](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000002699.md)
- [User supplied consumables for the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000002007.md)
- [Washes on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-reference_material-list/000002011.md)
- [Troubleshooting](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list.md)
- [Blank BaseSpace login screen during run setup on MiniSeq Control Software v2](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000003273.md)
- [Chemistry and Imaging on MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000005628.md)
- [MiniSeq Control Software v2.0 “Invalid Role” error with Local Run Manager v2.4.1](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000002304.md)
- [MiniSeq run display anomaly in Sequencing Analysis Viewer with Mid Output Flow Cells](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000001201.md)
- [Operational Qualifications Results upload prompt at end of run on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000002236.md)
- [Pre run check stalls on flow cell registration after installation of MiniSeq Control Software v2.0](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000002237.md)
- [Pre run check troubleshooting on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000001214.md)
- [Single Read option not available with Resequencing Analysis for the TruSeq HT kit on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000001216.md)
- [The optimal cluster density and PhiX loading concentration for MiniSeq runs](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000002008.md)
- [Troubleshooting "Ebox0 Fan is not operating as expected" warnings on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000007359.md)
- [Troubleshooting "Error in Fluidics, LanePump" error on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000007120.md)
- [Troubleshooting "Unable to create Output folder. MiniSeq does not have access to…" on MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000001210.md)
- [Troubleshooting "Y Stage Initialization Error Operation home failed..." errors on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000001815.md)
- [Troubleshooting Computer reboot hangs with Illumina logo splash screen on MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000001814.md)
- [Troubleshooting Duplicate analysis folders created for runs with successful LRM analyses on MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000002623.md)
- [Troubleshooting MiniSeq Z stages are not ready initialization error](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000006299.md)
- [Troubleshooting MiniSeq fails optical and stage tests "While measuring LED power"/"Failed XY Stage"](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000001809.md)
- [Troubleshooting RFID block can not be written (due to lock status) Error on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000008099.md)
- [Troubleshooting Timeout waiting 60000 ms within event EventToBlockingConverter error on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000002046.md)
- [Troubleshooting Windows 10 needs to be activated error on the MiniSeq.](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000005678.md)
- [Troubleshooting a "Syringe Overload" error on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000007953.md)
- [Troubleshooting camera, cluster, and focus errors at cycle 1 on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000001198.md)
- [Troubleshooting socket errors on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000001219.md)
- [Troubleshooting validation errors displaying when opening "module create run" page on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000001221.md)
- [Unable to pass pre run checks with Imaging Limits test on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000002061.md)
- [Wash Error "Binary Part number revision .. byte1 is invalid" on the MiniSeq](https://knowledge.illumina.com/instrumentation/miniseq/instrumentation-miniseq-troubleshooting-list/000001222.md)
- [MiSeq](https://knowledge.illumina.com/instrumentation/miseq.md)
- [FAQ](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list.md)
- [How to enable email notifications on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list/000007477.md)
- [Is it possible to perform a primer rehybridization on a MiSeq?](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list/000002536.md)
- [MiSeq Flow cell compatibility for v2 and v3 reagent kits](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list/000002538.md)
- [Run setup modes for the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list/000005572.md)
- [Setting up a sample sheet to send all reads to Undetermined in MiSeq Reporter](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list/000003628.md)
- [What are the MiSeq dimensions and placement requirements?](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list/000007969.md)
- [What are the lab temperature requirements for the MiSeq?](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list/000007967.md)
- [What are the power specifications for the MiSeq?](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list/000007968.md)
- [What color of cap on the MiSeq flow cell container corresponds to which type of flow cell?](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list/000003332.md)
- [What does the MiSeq status bar color mean?](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list/000006205.md)
- [What if I did not name the sample sheet with the MiSeq reagent cartridge barcode number?](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list/000002594.md)
- [What is the maximum read lengths and total number of cycles for MiSeq kits?](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list/000002595.md)
- [What is the minimum PhiX amount that can be spiked into a run?](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list/000002525.md)
- [When do quality scores appear during a sequencing run on the MiSeq?](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list/000002600.md)
- [When is the demultiplexing summary generated for analyzed MiSeq runs?](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list/000003372.md)
- [Which Illumina library preparation kits are compatible with the MiSeq?](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list/000002521.md)
- [Which controls should be used when sequencing low diversity libraries on a MiSeq?](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-faq-list/000002522.md)
- [Troubleshooting](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list.md)
- [How to recover Local Run Manager v3 Account when locked out](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000005751.md)
- [How to troubleshoot MiSeq runs taking longer than usual or expected](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000006023.md)
- [MiSeq RFID Bypass Code生成方法](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000007343.md)
- [MiSeq上开始一个测序反应的时候，遇到Flow Rate检测失败，该如何处理?](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000007115.md)
- [Troubleshooting "@@@ Failed to get temperature" error on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000001453.md)
- [Troubleshooting "Compensator Move and/or Sensor Failed" errors on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000008020.md)
- [Troubleshooting "Conflict" errors at end of MiSeq runs](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000008345.md)
- [Troubleshooting "Initialize Cameras before capturing images" error on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000007442.md)
- [Troubleshooting "Primary Analysis Not Ready" errors during Pre run Checks on MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000003755.md)
- [Troubleshooting "TEC2SERVO unrecognize char" error during MiSeq Control Software initialization](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000002865.md)
- [Troubleshooting "Unable to communicate with BaseSpace" error when setting up MiSeq run on Windows 10](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000007849.md)
- [Troubleshooting "Unsuccessfully attempted to launch module type" error with LRMv3 on MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000003872.md)
- [Troubleshooting "Y home sensor never tripped" error on MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000002353.md)
- [Troubleshooting 'Index outside the bounds of the array' error on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000001432.md)
- [Troubleshooting Cannot get Value value (type Boolean) errors on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000008532.md)
- [Troubleshooting Cavro Pump Error on MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000001454.md)
- [Troubleshooting FASTQ Generation failing to start automatically in MiSeq using MiSeq Reporter](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000003614.md)
- [Troubleshooting FASTQ generation not occurring automatically after a MiSeq run has completed successfully and successfully uploaded to BaseSpace](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000008692.md)
- [Troubleshooting FPGA RFID ERROR STATUS 2 errors on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000001909.md)
- [Troubleshooting Free Disk Space errors during Pre run Checks on MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000003753.md)
- [Troubleshooting Invalid Role Errors after Post Run Washes on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000009173.md)
- [Troubleshooting LRM error "Valid index kit must be provided for the selected library prep kit"](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000003876.md)
- [Troubleshooting MiSeq "Z Motor The Z stage amp Op amp might not be wired correctly" Error](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000001913.md)
- [Troubleshooting MiSeq washes taking extended time to complete](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000002083.md)
- [Troubleshooting MiSeqOverride.cfg Errors on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000003299.md)
- [Troubleshooting Network Connection Active errors during Pre run Checks on MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000003754.md)
- [Troubleshooting PR2 Bottle Not Detected Error on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000001451.md)
- [Troubleshooting RFID Not Recognized Error on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000001459.md)
- [Troubleshooting RFID cannot be written error on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000001450.md)
- [Troubleshooting Reagent Valve errors on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000001458.md)
- [Troubleshooting Sample Sheet will not Load into MiSeq Control Software](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000001455.md)
- [Troubleshooting Sipdown Errors on the MiSeq video](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000006824.md)
- [Troubleshooting Stalled Flow Rate Check on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000009288.md)
- [Troubleshooting Waste Bottle is Full notification on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000001429.md)
- [Troubleshooting Z Motor Positive soft limit too nonlinear at innermost test point on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000002241.md)
- [Troubleshooting an Object Reference Error on MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000001428.md)
- [Troubleshooting file is not properly formatted warning on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000009180.md)
- [Troubleshooting frozen MiSeq Control Software](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000001890.md)
- [Troubleshooting high cluster density on MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000006801.md)
- [Troubleshooting no intensity for index read on MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000001461.md)
- [Troubleshooting scratched or damaged flow cells on MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000003192.md)
- [如何在MiSeq系统上重启RTA](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000007341.md)
- [如何排查MiSeq平台上的第一个循环报错的原因？](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-troubleshooting-list/000007340.md)
- [Reference Material](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list.md)
- [How To Power Cycle the MiSeq Video](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000005871.md)
- [How to Denature and Dilute Libraries and Spike in PhiX on the MiSeq Video](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000007462.md)
- [How to Prepare a MiSeq Sequencing Reagent Cartridge Video](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000006670.md)
- [How to Start a Run on the MiSeq Video](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000007463.md)
- [How to configure MiSeq Reporter to use a network location as the default output folder](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000002256.md)
- [How to find sample sheet templates for MiSeq Control Software (MCS) v4.0 Local Run Manager](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000003882.md)
- [How to make sure FASTQ generation occurs in MiSeq Reporter when using BaseSpace for analysis](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000003616.md)
- [How to navigate the MiSeq Self Service Resources tool](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000007446.md)
- [How to prepare low concentration (< 2 nM) libraries for sequencing on a MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000006058.md)
- [How to properly format and use a custom reference genome in MiSeq Reporter](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000002212.md)
- [How to set up a PhiX validation run on MiSeq (using software v2.6 and earlier)](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001884.md)
- [How to set up the sample sheet for a PhiX validation run on the MiSeq using IEM](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001244.md)
- [MiSeq Run Quality and Best Practices Support Webinar Video](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000008040.md)
- [MiSeq Sequencing Reagents Preparation: Flow cell Video](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000006669.md)
- [MiSeq flow cell tiles by flow cell type](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001672.md)
- [MiSeq output and analysis folder quick reference guide](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000005817.md)
- [MiSeq上机测序时如何准备＜2nM 的文库](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000007417.md)
- [Reference images for the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000002700.md)
- [Run folder sizes and Disk Space on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000006711.md)
- [Sample sheet creation for MiSeq Control Software v2.6 and Earlier](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000002396.md)
- [Technical resources for the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000007486.md)
- [Thumbnail Image naming conventions for the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000003082.md)
- [Upgrading to MiSeq Control Software v4.0](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000005753.md)
- [User supplied consumables for sequencing on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001675.md)
- [Wash Notifications on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq/instrumentation-miseq-reference_material-list/000001448.md)
- [MiSeq RUO](https://knowledge.illumina.com/instrumentation/miseq-ruo.md)
- [Reference Material](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list.md)
- [Best practices for maintaining the computer on a MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000006708.md)
- [Chemistry and imaging on MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000003757.md)
- [Consumable Part Numbers for the MiSeq and Total SBS cycles available](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000005842.md)
- [Custom sequencing primers on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000002414.md)
- [Enabling run storage and analysis in BaseSpace for MiSeq runs](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000003618.md)
- [File paths for the MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000001678.md)
- [Frequently asked questions about upgrading to MiSeq Control Software v4.0](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000005752.md)
- [How to Power Cycle the MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000001894.md)
- [How to check network settings on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000002383.md)
- [How to clean the MiSeq flow cell holder](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000003500.md)
- [How to generate RFID bypass codes for the MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000001528.md)
- [How to generate an RFID bypass code in MyIllumina Video](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000005859.md)
- [How to stop and restart RTA on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000002031.md)
- [Recommendations for optimal cluster density and PhiX loading concentrations on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000001676.md)
- [Specifications for the MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000001670.md)
- [Troubleshooting](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list.md)
- [Best practices to avoid low cluster density on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001844.md)
- [How to Check if a MiSeq Reagent Cartridge was pierced during a run](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000003497.md)
- [How to access Windows on the MiSeq if there is black screen at boot up](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001658.md)
- [How to troubleshoot The process cannot access the file error on MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001910.md)
- [Troubleshooting "Access to the path 'Global\Local Run Manager' is denied" on MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000008538.md)
- [Troubleshooting "Camera exception, error= 360: Failed to perform sBCa" error on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000007301.md)
- [Troubleshooting FPGA Timeout Errors on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001444.md)
- [Troubleshooting MiSeq Control Software (MCS) v4 stalling during initialization](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000005502.md)
- [Troubleshooting Y Motor Errors on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001452.md)
- [Troubleshooting Z motor errors occurring mid run on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001850.md)
- [Troubleshooting a Focus Mirror Error on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001449.md)
- [Troubleshooting a MiSeq "Consecutive Camera Failure Limit has been Exceeded for this Run" error](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000005566.md)
- [Troubleshooting a bubble in MiSeq flow cell](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001996.md)
- [Troubleshooting best focus errors occurring mid run on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001849.md)
- [Troubleshooting cycle 1 errors on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001430.md)
- [Troubleshooting failed MiSeq system checks](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000007050.md)
- [Troubleshooting low cluster density on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000001445.md)
- [Troubleshooting mid run shutdowns or reboots on the MiSeq](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-troubleshooting-list/000002092.md)
- [FAQ](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list.md)
- [Can MiSeq Reagents be stored at 80°C rather than 20°C?](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000008114.md)
- [Can Sequencing Analysis Viewer (SAV) be used with the MiSeq System to view primary analysis results?](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000002601.md)
- [Can a MiSeq post run wash be performed every week instead of entering standby mode?](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000006976.md)
- [Can a MiSeq v2 flow cell be used for sequencing with a MiSeq v3 reagent cartridge?](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000002317.md)
- [Can an entire index be N padded in Miseq Reporter?](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000003624.md)
- [Can an expired reagent cartridge be used for a MiSeq run?](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000002254.md)
- [Do MiSeq Wash Tubes include an expiration date?](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000009678.md)
- [Does MiSeq verify the number of cycles in a planned run against the cycles supported by the reagent kit?](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000003094.md)
- [How Long Does the Flow Rate Check Take During the MiSeq Pre Run Checks?](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000009127.md)
- [How much template does the MiSeq System use?](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000002524.md)
- [How to access MiSeq Reporter](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000003627.md)
- [How to stop a MiSeq run](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-faq-list/000005081.md)
- [MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series.md)
- [Reference Material](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list.md)
- [Activating TeamViewer on the MiSeq i100 Series instruments](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009237.md)
- [Air Filter replacement on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009998.md)
- [Considerations for Index color balancing on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009405.md)
- [Consumable catalog numbers for the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009216.md)
- [Estimating Disk Space Utilization on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009356.md)
- [File paths on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009212.md)
- [Handling and disposal information for used reagents on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009312.md)
- [How to Configure Network Settings for the MiSeq i100 after First Time Setup](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009308.md)
- [How to Populate the Indexes Tab in Sequencing Analysis Viewer (SAV) for MiSeq i100 Runs](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000010140.md)
- [How to Power Cycle the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009277.md)
- [How to Restart File Transfer on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009335.md)
- [How to Setup a Remote Connection to Illumina Run Manager on the MiSeq i100 Series Instruments](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009334.md)
- [How to Setup the System Checks on the MiSeq i100 Series Instruments](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009206.md)
- [How to Spike in PhiX for the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009404.md)
- [How to change passwords for the Control Software accounts on the MiSeq i100 Series Instrument](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009338.md)
- [How to configure Time Settings on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000010045.md)
- [How to perform the Factory Restore on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000010158.md)
- [How to requeue a MiSeq i100 Series run locally (on the instrument)](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000010108.md)
- [How to retrieve the DRAGEN (FPGA) Serial Number for MiSeq i100 Series Systems](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009353.md)
- [How to set up a PhiX validation run on MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009320.md)
- [Instrument reference images for the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009411.md)
- [Introduction to the MiSeq i100 Series Support Webinar Video](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000010145.md)
- [Loading Concentration Optimization Recommendations for the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009340.md)
- [Offline DRAGEN License Installation on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009557.md)
- [Planning a Manual Mode Run on MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009499.md)
- [RTA4 Q Score Bin Ranges on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009540.md)
- [Reagent Stability Guidelines for the MiSeq i100 Series Consumables](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009351.md)
- [Recommended Network Security Allow List for the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009336.md)
- [Run Mode options for the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009218.md)
- [Run Setup using the MiSeq i100 Series 100 cycle kit Turbo Custom Recipe](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000010190.md)
- [Sequencing Illumina Stranded Total RNA and mRNA Libraries on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009350.md)
- [Specifications for the MiSeq i100 Series Instruments](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009204.md)
- [Spiking custom primers into the Illumina sequencing primers for MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009551.md)
- [Tested Product Guidance for USB External Storage Devices on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009310.md)
- [Two Channel Chemistry and Imaging on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009348.md)
- [Waste Volumes for MiSeq i100 Series Reagents](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-reference_material-list/000009382.md)
- [Troubleshooting](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list.md)
- [Cloud Analysis Errors using Sample Sheet Workflow on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009549.md)
- [How to Troubleshoot Clustering Failures on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009347.md)
- [How to troubleshoot “Some of the settings may not be available when system activity is in progress” during run setup in MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000010139.md)
- [Mitigating Instrument Platform Services Errors on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009545.md)
- [Troubleshooting "Additional instrument configuration is required" Issues on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009305.md)
- [Troubleshooting "Upload mode has been set to None" Errors on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009936.md)
- [Troubleshooting 'An unexpected error occurred during sequencing' Errors on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009264.md)
- [Troubleshooting 'EdgeOS You are offline' errors on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009276.md)
- [Troubleshooting 'Failed to start First Time Setup' Errors on the MiSeq i100 Series Instruments](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009239.md)
- [Troubleshooting 'Status code 523' Errors in Cloud Settings on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009380.md)
- [Troubleshooting '\[XYZ\] encountered an exception on the IX server' errors on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009774.md)
- [Troubleshooting APIException: Bad Request Errors when setting Default Output Folder on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009292.md)
- [Troubleshooting Bad Request Errors When Adding Output Folder on MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000010126.md)
- [Troubleshooting CIM Homing Errors during Initialization on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009568.md)
- [Troubleshooting Cloud Connectivity Pre Run Check Errors on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009463.md)
- [Troubleshooting Dry cartridge ID mismatch Warning on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009916.md)
- [Troubleshooting Flow Cell Thermal Errors during Pre Run Checks on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009459.md)
- [Troubleshooting Fluidics Pre Run Check Errors at 88% on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009693.md)
- [Troubleshooting HttpClient.Timeout Errors during Pre Run Checks on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009262.md)
- [Troubleshooting Inaccurate Estimated Completion Time on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009362.md)
- [Troubleshooting Index Dropouts or No Reads Identified for Single Sample on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009400.md)
- [Troubleshooting Instrument Network Configuration (INC) Service Issues on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009935.md)
- [Troubleshooting Insufficient Space on External Storage on the MiSeq i100 Series Instruments.](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009208.md)
- [Troubleshooting Internal Server Error in Cloud Settings on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009260.md)
- [Troubleshooting Issues with Waste Level Sensor System Check on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009478.md)
- [Troubleshooting Leak Detection Errors on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009281.md)
- [Troubleshooting Memory Metal Alloy (MMA) Motion Stalls on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009205.md)
- [Troubleshooting Pressure Charging Failures on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009266.md)
- [Troubleshooting Slow or Unresponsive User Interface on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009684.md)
- [Troubleshooting Stalled Cloud Login Screen on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009391.md)
- [Troubleshooting Stalled Secondary Analyses Onboard the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009386.md)
- [Troubleshooting Stalled or Frozen Sequencing Runs on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009606.md)
- [Troubleshooting System Configuration errors during Pre Run Checks on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009287.md)
- [Troubleshooting Touch Screen Not Responding on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009443.md)
- [Troubleshooting Unable to connect to external storage Errors on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009263.md)
- [Troubleshooting “The loaded dry cartridge is not supported for sequencing” error on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000010125.md)
- [Unlocking a Locked Cloud Planned Run on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009702.md)
- [Updating the DRAGEN Microbial Enrichment (DME) Databases on the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-troubleshooting-list/000009962.md)
- [FAQ](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-faq-list.md)
- [Can a run on the MiSeq i100 Series use expired reagents?](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-faq-list/000010141.md)
- [When will Live %Demux information be available for a MiSeq i100 Series run?](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-faq-list/000009261.md)
- [Where to find the MAC Address for the MiSeq i100 Series](https://knowledge.illumina.com/instrumentation/miseq-i100-series/instrumentation-miseq-i100-series-faq-list/000009486.md)
- [NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550.md)
- [FAQ](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-faq-list.md)
- [At which cycle of NextSeq 500/550 are run metrics calculated?](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-faq-list/000002584.md)
- [Can the output folder for a NextSeq 500/550 run be saved to the local computer?](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-faq-list/000005512.md)
- [Common questions regarding custom recipes for the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-faq-list/000002618.md)
- [Do NextSeq 500/550 v2.5 runs have different specifications than v2.0 reagent runs?](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-faq-list/000002609.md)
- [How to set up a NextSeq 500/550 to upload to a BaseSpace Enterprise account using NCS v.4.0.1](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-faq-list/000005913.md)
- [Run setup modes for the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-faq-list/000005574.md)
- [What do the NextSeq 500/550 status bar colors mean?](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-faq-list/000006206.md)
- [What is the maximum read length supported in one direction on a NextSeq 500/550 run?](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-faq-list/000002588.md)
- [Will the NextSeq 500/550 Control Software prevent run setup with read lengths fewer than 25 cycles?](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-faq-list/000002565.md)
- [Reference Material](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list.md)
- [Best Practices for maintaining the computer on a NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000007445.md)
- [Chemistry and Imaging on NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000002078.md)
- [Consumable part numbers for the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000001975.md)
- [File paths for the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000002072.md)
- [How to Denature and Dilute Libraries on the NextSeq 500/550 Video](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000005863.md)
- [How to Find the Control Software Version on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000009328.md)
- [How to Prepare Reagents Pre Run on the NextSeq 500/550 Video](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000007450.md)
- [How to Replace a NextSeq 500/550 Air Filter](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000005604.md)
- [How to change a run folder name on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000002087.md)
- [How to create Local Run Manager credentials to perform a NextSeq 500/550 system check in NCS 4.0.X](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000002088.md)
- [How to denature and dilute libraries on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000002064.md)
- [How to enable/disable Illumina Proactive on NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000002550.md)
- [How to perform washes on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000003076.md)
- [How to select custom recipes on the NextSeq 500/550 in NextSeq Control Software (NCS) 4.0.X](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000002138.md)
- [How to set up a PhiX validation run on the NextSeq 500/550 in manual mode](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000001532.md)
- [How to set up a Wash on the NextSeq 500/550 Video](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000005864.md)
- [How to set up a run on the NextSeq 500/550 Video](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000005862.md)
- [How to skip the pre run check confirmation on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000003187.md)
- [How to turn on thumbnails for troubleshooting on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000002085.md)
- [How to use a 10X Multiome ATAC Library custom recipe for NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000007480.md)
- [Layout for NextSeq 500/550 flow cells](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000001977.md)
- [Layout of the NextSeq 500/550 Components](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000002073.md)
- [Maximum read lengths and number of cycles for different NextSeq 500/550 kits](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000007448.md)
- [NextSeq 500/550 Run Quality and Best Practices Support Webinar Video](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000008045.md)
- [Optical System on NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000002076.md)
- [Post Run Automatic Purge for NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000001971.md)
- [Recommendations for using custom primers on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000002063.md)
- [Recommended PhiX Loading for a NextSeq 550 Validation Run](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000002068.md)
- [Run folder sizes and disk space on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000007440.md)
- [Specifications for the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000001942.md)
- [Temperature control on NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000002077.md)
- [Thumbnail image information on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-reference_material-list/000003084.md)
- [Troubleshooting](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list.md)
- [Best practices for NextSeq 500/550 pre run check failures requiring a power cycle](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000005855.md)
- [How to change a NextSeq 500/550 nickname](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000005911.md)
- [How to fix inaccurate or inverted touch screen on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000007990.md)
- [How to perform a NextSeq 500/550 system check](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001883.md)
- [How to troubleshoot "An existing connection was forcibly closed by a remote host" error on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000002361.md)
- [NextSeq 500/550 Control Software v4.0.1 "Invalid Role" error with Local Run Manager v2.4.0](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000002190.md)
- [Optimal cluster density guidelines for the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000002067.md)
- [Troubleshooting "Local Run Manager Error Row was updated or deleted" error on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000007036.md)
- [Troubleshooting 'Lane Pump not initialized' fluidics related error on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000002103.md)
- [Troubleshooting 'Not Found' error message on NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001834.md)
- [Troubleshooting Access to the path 'C:\NextSeqCalibration.cfg' is denied error on NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000003209.md)
- [Troubleshooting Cannot Update Metrics errors on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000002137.md)
- [Troubleshooting Custom Sequencing Primers selected by mistake in manual mode on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000002843.md)
- [Troubleshooting Cycle 1 Error, Camera Disabled, Failed to Detect Clusters on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001681.md)
- [Troubleshooting Local Run Manager originally caused by an internal server error on NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000007806.md)
- [Troubleshooting NVRAM or Socket Errors on NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001391.md)
- [Troubleshooting NextSeq 500/550 (NCS 2.2 or earlier) not showing Planned Run from BaseSpace PrepTab](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000007437.md)
- [Troubleshooting NextSeq 500/550 run stopping with "Local Run Manager Error: Bad Request" error](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000002771.md)
- [Troubleshooting Object Reference error on NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000007435.md)
- [Troubleshooting Possible Stale Image Data Detected on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001388.md)
- [Troubleshooting RFID errors on NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001914.md)
- [Troubleshooting RheodyneValve error on NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001389.md)
- [Troubleshooting ThermoCouple\_Side TemperatureProbe not operating as expected on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000007810.md)
- [Troubleshooting Unable to Unload Reagents on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000002726.md)
- [Troubleshooting Universal Copy Server error on the NextSeq 500/550 (NCS 4.0+)](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000002770.md)
- [Troubleshooting Wash State Unknown in NextSeq 500/550 Control Software (NCS) v4.0.0](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000002114.md)
- [Troubleshooting a "Failed to Get Temperature" warning on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001382.md)
- [Troubleshooting a CavroSyringePump Error on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001380.md)
- [Troubleshooting a Failed Camera Board on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001683.md)
- [Troubleshooting a Flow Cell Door error on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000003265.md)
- [Troubleshooting a Flow Cell Registration Failed (Skew) warning on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000002053.md)
- [Troubleshooting a NextSeq 500/550 Cavro Syringe Pump error](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000007432.md)
- [Troubleshooting a RAID error on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001688.md)
- [Troubleshooting a Remote Server Returned An Error on NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001812.md)
- [Troubleshooting a Software Shutdown Issue Warning on the NextSeq 500/550 with NCS 4.0.X](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000002449.md)
- [Troubleshooting a Specific Camera Disabled Failed to Detect Clusters error on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001379.md)
- [Troubleshooting a buffer cartridge/tray stuck in the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001668.md)
- [Troubleshooting a flow cell registration stall during pre run checks on first run on NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000002112.md)
- [Troubleshooting an Async Firmware Operation Error on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001680.md)
- [Troubleshooting an Internal Temperature was Out of Range error on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000007529.md)
- [Troubleshooting an empty output folder on the NextSeq 500/550 NCS 4.0+](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000005028.md)
- [Troubleshooting an error related to InstrumentMaintenanceState.xml on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000003516.md)
- [Troubleshooting an imaging system failed pre run check error on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001385.md)
- [Troubleshooting an initialization failure due to Proxy warning on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001684.md)
- [Troubleshooting blank BaseSpace login screen during run setup for Windows 10 instruments (NextSeq 500/550, MiSeq, MiniSeq and Novaseq 6000)](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000003666.md)
- [Troubleshooting flow cell registration failed to find fiducial on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001383.md)
- [Troubleshooting fluidics automation error on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001384.md)
- [Troubleshooting issues unloading reagents on a NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000007434.md)
- [Troubleshooting mid run Camera Disabled error on the NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001378.md)
- [Troubleshooting no output folder created when set in the Local drive on NextSeq 500/550 (NCS 4.0)](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000001685.md)
- [Troubleshooting pre run checks with Temperature sensor check failed: Board 0/1 on NextSeq 500/550](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000006373.md)
- [Troubleshooting presence of snr.csv Files in Temp folder on NextSeq 500/550 (NCS 4.0.2)](https://knowledge.illumina.com/instrumentation/nextseq-500-550/instrumentation-nextseq-500-550-troubleshooting-list/000003878.md)
- [NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000.md)
- [FAQ](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list.md)
- [Can NextSeq 1000/2000 custom primers be diluted in in RSB with Tween instead of HT1?](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000006981.md)
- [Can NextSeq 1000/2000 run folders be set up to be deleted automatically?](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000005385.md)
- [Can a NextSeq 1000/2000 reagent cartridge be used if the foil packaging has been pierced?](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000008942.md)
- [Can a NextSeq 1000/2000 sequencing run be set up with fewer than 26 cycles in read 1?](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000006385.md)
- [Can a run be started on the NextSeq 1000/2000 without an active DRAGEN license?](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000003224.md)
- [Can a run on the NextSeq 1000/2000 use expired reagents?](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000003822.md)
- [Can additional users be added to the Linux interface on the NextSeq 1000/2000?](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000003802.md)
- [Can the NextSeq 1000/2000 run on 120V or 240V power?](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000005326.md)
- [Common Questions Related to Sequencing Analysis Viewer (SAV) software and the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000007863.md)
- [Custom recipes for Illumina Stranded libraries on NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000005583.md)
- [Does the NextSeq 1000/2000 have thumbnail images available for troubleshooting?](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000003096.md)
- [Does the NextSeq 1000/2000 require a wash after run completes?](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000005500.md)
- [How to create new user accounts on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000006467.md)
- [How to dispose of a NextSeq 1000/2000 flow cell?](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000006133.md)
- [How to obtain a NextSeq 1000/2000 v2 sample sheet?](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000003093.md)
- [How to switch user accounts on NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000007856.md)
- [Is there a maximum number of cycles for index reads on the NextSeq 1000/2000?](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000003459.md)
- [What is the difference between RSB with Tween 20, part number 20047304 and 20050639?](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000006829.md)
- [What is the difference between process management and disk management on the NextSeq 1000/2000?](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000005707.md)
- [Which NextSeq 1000/2000 run modes require a v2 sample sheet?](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-faq-list/000003092.md)
- [Reference Material](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list.md)
- [Air filter replacement on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000005457.md)
- [Autocenter process and images on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000002724.md)
- [Best practices for custom sequencing primer use on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000002431.md)
- [Chemistry and imaging on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003035.md)
- [Cleaning NextSeq 1000/2000 cartridge tray in case of reagent leak inside the instrument](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000008334.md)
- [Consumable part numbers for the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000002390.md)
- [Custom recipes on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003421.md)
- [Demultiplex information from DRAGEN on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000002446.md)
- [Disk Management on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000002445.md)
- [Editing runs from Run Planning after selection in the NextSeq 1000/2000 control software](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003205.md)
- [End of Life Schedule for NextSeq 1000/2000 SBS Standard Consumables](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000009213.md)
- [File paths on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000002443.md)
- [Flow cell overview for the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000002392.md)
- [How To Perform a System Check on the NextSeq 1000/2000 Video](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000005623.md)
- [How To Replace the NextSeq 1000/2000 Air Filter Video](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000005622.md)
- [How To Update The Software On A NextSeq 1000/2000 Video](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000005624.md)
- [How to Enable Illumina Proactive on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003676.md)
- [How to Manually Start and Stop Universal Copy Service (UCS) on the NextSeq 1000/2000 Video](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000006674.md)
- [How to Mount a Network Drive via Network File System (NFS) on NextSeq 1000/2000 Video](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000007143.md)
- [How to Mount a Network Drive via SMB/CIFS on NextSeq 1000/2000 Video](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000007142.md)
- [How to Store and Prepare Consumables for a NextSeq 1000/2000 XLEAP SBS Run Video](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000009906.md)
- [How to Use the Cartridge Recycling Tool for NextSeq 1000/2000 Video](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000006565.md)
- [How to check free disk space via terminal on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000005244.md)
- [How to install TeamViewer QuickSupport on NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003149.md)
- [How to navigate to TeamViewer on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003150.md)
- [How to perform Linux OS updates on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003826.md)
- [How to perform System Checks on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003457.md)
- [How to power cycle the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003038.md)
- [How to properly delete runs on the NextSeq 1000/2000 Video](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000005621.md)
- [How to set up a PhiX validation run on the NextSeq 1000/2000 sequencing platform](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000005229.md)
- [How to setup a sequencing run for the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000006688.md)
- [Index color balancing for the NextSeq 1000/2000 system using standard SBS reagents](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003339.md)
- [Index orientation in v2 sample sheets for the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003142.md)
- [Index read strategy for the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000002434.md)
- [Introduction to the NextSeq 1000/2000 System Support Webinar Video](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000008055.md)
- [Library denaturation for the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000002432.md)
- [Links to resources and helpful notes for the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000002388.md)
- [Lost connection with server error on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000008547.md)
- [Manual denaturation of libraries on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003741.md)
- [Moving custom recipes using the Linux terminal on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003758.md)
- [Networking and output locations on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003037.md)
- [NextSeq 1000/2000 Control Software v1.5.0 installation instructions](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000007830.md)
- [NextSeq 1000/2000 Loading Optimization for XLEAP SBS kits](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000008693.md)
- [NextSeq 1000/2000 XLEAP SBS Cartridge Preparation Video](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000008924.md)
- [NextSeq 1000/2000 loading optimization for Standard SBS kits](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000002435.md)
- [NextSeq 1000/2000 reagents disposal and cartridge recycling tool](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000002391.md)
- [Purge settings on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003039.md)
- [Real Time Analysis (RTA) on NextSeq 1000/2000 Overview](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000002441.md)
- [Reference images for NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000002743.md)
- [Returning NextSeq 1000/2000 reagents to storage](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003033.md)
- [Run mode options for the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000002450.md)
- [Sample sheets for the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003315.md)
- [Setting external hard drives as the default output folder on NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000005674.md)
- [Shelf life of NextSeq 1000/2000 reagents](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003709.md)
- [Shipping of the reagent cartridge for the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003805.md)
- [Specifications for the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000002387.md)
- [Storage temperature, shipping conditions and dimensions of NextSeq 1000/2000 reagents](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003034.md)
- [Thawing and reagent preparation guidelines for the NextSeq 1000/2000 reagents](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000002430.md)
- [Tips and tricks for navigating the Linux Environment on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003344.md)
- [User accounts and password management on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000003040.md)
- [Viewing NextSeq 1000/2000 runs in Sequencing Analysis Viewer](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000002501.md)
- [What does NextSeq 1000/2000 status bar color mean?](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-reference_material-list/000002448.md)
- [Troubleshooting](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list.md)
- [Failure to find fiducial errors on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000003549.md)
- [Flow cell not detected error on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000006639.md)
- [How To Power Cycle NextSeq 1000/2000 Video](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000005552.md)
- [How to Reset Linux Operating System (OS) User Passwords on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000003297.md)
- [How to resolve an error occurred while populating NextSeq 1000/2000 data in SAV](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000007427.md)
- [Humidity warning during pre run check on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000003527.md)
- [Internal network issues on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000003638.md)
- [Manually stopping and restarting Universal Copy Service (UCS) on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000003515.md)
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- [Resolving issues with Process Management on NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000006526.md)
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- [Troubleshooting "An error occurred while checking requeue availability" on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000006285.md)
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- [Troubleshooting "Initialization failed on Integrated Imaging Module" error on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000003548.md)
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- [Troubleshooting 'mount' Errors when Networking NextSeq 1000/2000 Instruments](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000006964.md)
- [Troubleshooting DRAGEN version warnings and errors after the NextSeq 1000/2000 Control Software upgrade to version 1.7](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000008688.md)
- [Troubleshooting Failed to execute connectivity check input parameters on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000005227.md)
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- [Troubleshooting NextSeq 1000/2000 Control Software failure to initialize with cartridge error](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000007029.md)
- [Troubleshooting NextSeq 1000/2000 eject cartridge prompt remains after ejecting the cartridge](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000006554.md)
- [Troubleshooting NextSeq 1000/2000 low read 1 intensity](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000007095.md)
- [Troubleshooting System File errors during pre run checks on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000009048.md)
- [Troubleshooting a black screen after a power cycle on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000003863.md)
- [Troubleshooting an Unexpected Shutdown on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000003637.md)
- [Troubleshooting install package integrity check failed during NextSeq 1000/2000 upgrade to v1.7](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000008890.md)
- [Troubleshooting keyring prompts on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000006152.md)
- [Troubleshooting network output directory issues after updating to NextSeq 1000/2000 CS v1.5](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000007572.md)
- [Troubleshooting no DRAGEN License after installing DRAGEN BCL Convert 4.2](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000008923.md)
- [Troubleshooting pre run check failure due to "Imaging test failed" on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000009854.md)
- [Understanding loading and percent loading concentration on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000003121.md)
- [Universal Copy Service failed to validate the Output Folder error on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000003547.md)
- [Updating the system time on the NextSeq 1000/2000](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000006790.md)
- [Why is NextSeq 1000/2000 control software update not available from the Software Update menu?](https://knowledge.illumina.com/instrumentation/nextseq-1000-2000/instrumentation-nextseq-1000-2000-troubleshooting-list/000007335.md)
- [NovaSeq X/X Plus](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus.md)
- [Troubleshooting](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list.md)
- [How to Resolve "sma\_air\_a/b was not present in dictionary" Errors During Pre Run Checks on the NovaSeq X Plus](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000008539.md)
- [How to Troubleshoot No Intensity or 0% Passing Filter at Inlet and Outlet Tiles on NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000007994.md)
- [How to enable ssh access on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000010077.md)
- [How to requeue or perform a new analysis of existing data on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000007765.md)
- [How to resolve 'An unexpected error has occurred with system integration' during initialization on the NovaSeq X Series Instruments](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000007766.md)
- [How to resolve 'An unknown error has occurred' critical system errors on the NovaSeq X Series Instruments](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000007997.md)
- [How to resolve Network Connection warnings during Pre Run Checks on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000008308.md)
- [How to resolve issues with keyboard tray ejecting on the NovaSeq X/X Plus](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000007823.md)
- [How to troubleshoot "The instrument encountered a thermal coolant error" on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000008271.md)
- [How to troubleshoot CIB Fault Initialization errors on the NovaSeq X/X Plus](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000007819.md)
- [How to troubleshoot Insufficient Memory errors during Pre Run Checks on the NovaSeq X Series Instruments](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000008466.md)
- [How to troubleshoot MaxWetS2SpotIntensity Errors during Wet Pre Run Checks on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000008269.md)
- [How to troubleshoot clustering failures on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000008328.md)
- [How to troubleshoot errors during the pre run Wet Checks on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000007951.md)
- [How to troubleshoot low percent clusters passing filter (%PF) on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000007783.md)
- [Troubleshooting "Unable to update index information of the Library" on the NovaSeq X/X Plus](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000007947.md)
- [Troubleshooting 'A configuration file cannot be assessed' Warnings during Pre Run Checks on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000009365.md)
- [Troubleshooting 'Insufficient memory to continue the execution of the program' errors on the NovaSeq X Plus](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000008636.md)
- [Troubleshooting 'One or more unknown settings found' Errors during Run Planning on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000009387.md)
- [Troubleshooting Flow Cell Vacuum Failed to Engage on the NovaSeq X/X Plus](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000009297.md)
- [Troubleshooting Issues with Allocating Disk Space during Pre Run Checks on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000009383.md)
- [Troubleshooting Lyo Insert errors during run set up on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000009778.md)
- [Troubleshooting Reagent Compartment Doors Failing to Unlock on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000009121.md)
- [Troubleshooting Regions of Reduced %Passing Filter on NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000009570.md)
- [Troubleshooting multiple entries with identical indices error during run setup on NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000009153.md)
- [Troubleshooting the large waste bottle is full error on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-troubleshooting-list/000009829.md)
- [FAQ](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-faq-list.md)
- [Custom recipes for Illumina Stranded libraries on NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-faq-list/000008394.md)
- [Does the NovaSeq X Series use Single or Multi Node Connection Terminations?](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-faq-list/000008430.md)
- [Effects of library quality and indexes on demultiplexing NovaSeq X Series data](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-faq-list/000009246.md)
- [Handling and Disposal Recommendations for Used Reagents on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-faq-list/000008392.md)
- [When are the run folders created after initiating a sequencing run on the NovaSeq X/X Plus?](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-faq-list/000007999.md)
- [Which lanes should be selected during sample sheet creation for a 1.5B run on the NovaSeq X/X Plus](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-faq-list/000008897.md)
- [Reference Material](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-reference_material-list.md)
- [Air filter replacement on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-reference_material-list/000008457.md)
- [Best Practices for Pooling Libraries on NovaSeq X Series to Mitigate Lane to Lane Contamination](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-reference_material-list/000010118.md)
- [Chemistry and Imaging on the NovaSeq X Series Instruments](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-reference_material-list/000007970.md)
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- [How to Power Cycle the NovaSeq X Series Instruments](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-reference_material-list/000007478.md)
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- [How to access network storage locations in Linux on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-reference_material-list/000008035.md)
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- [Planning a Manual Mode Run on NovaSeq X/X Plus](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-reference_material-list/000008540.md)
- [RTA4 Q Score Bin Ranges on the NovaSeq X/X Plus](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-reference_material-list/000008320.md)
- [Reagent stability and thawing guidelines for the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-reference_material-list/000007561.md)
- [Run Mode options for the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-reference_material-list/000007753.md)
- [Troubleshooting Insufficient Storage Space Errors during Pre Run Checks on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-reference_material-list/000007797.md)
- [User Accounts and Password Management on the NovaSeq X/X Plus Instrument](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-reference_material-list/000007772.md)
- [Using custom sequencing recipes on Illumina NovaSeq X Series instruments](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-reference_material-list/000010171.md)
- [Using expired reagents on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-reference_material-list/000009477.md)
- [Using the BaseSpace Command Line Interface (CLI) Tool on the NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-reference_material-list/000008641.md)
- [Validated USB Storage Devices for NovaSeq X Series Control Software v1.3.1](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-reference_material-list/000009577.md)
- [Wash Flow Cell Use Counter on NovaSeq X Series](https://knowledge.illumina.com/instrumentation/novaseq-x-x-plus/instrumentation-novaseq-x-x-plus-reference_material-list/000009315.md)
- [NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000.md)
- [FAQ](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-faq-list.md)
- [Can a NovaSeq 6000 4 lane Xp kit be used for 2 lane NovaSeq 6000 flow cells?](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-faq-list/000007916.md)
- [Can a different tube type be used in place of the library tubes for NovaSeq 6000 runs?](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-faq-list/000003337.md)
- [Can a lab network be upgraded to support faster file transfer on the NovaSeq 6000?](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-faq-list/000006727.md)
- [Can custom primers be used on the NovaSeq 6000 System?](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-faq-list/000002571.md)
- [Can different libraries pools be loaded in each lane when using NovaSeq 6000 Xp workflow?](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-faq-list/000002568.md)
- [Can expired consumables be used for a NovaSeq 6000 run?](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-faq-list/000002561.md)
- [How does the NovaSeq 6000 Xp workflow differ from NovaSeq 6000 Standard workflow?](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-faq-list/000002553.md)
- [How long will the NovaSeq 6000 UPS support the instrument should backup power not engage?](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-faq-list/000006305.md)
- [How often does the NovaSeq 6000 wash flow cell need to be replaced?](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-faq-list/000002572.md)
- [Is a local copy of each run saved on the NovaSeq 6000?](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-faq-list/000003491.md)
- [What do NovaSeq 6000 status bar colors mean?](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-faq-list/000006211.md)
- [What effect does prolonged flow cell staging time have on clustering for the NovaSeq 6000?](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-faq-list/000007323.md)
- [What is the library loading concentration for NovaSeq 6000 Xp workflow?](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-faq-list/000002558.md)
- [What volume of ExAmp reagent is added by the NovaSeq 6000 during a standard run?](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-faq-list/000006941.md)
- [When can runs be staggered on NovaSeq 6000?](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-faq-list/000002324.md)
- [Where to find the Safety Data Sheet (SDS) for NovaSeq6000 coolants?](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-faq-list/000007903.md)
- [Which types of sample sheet can be used when analyzing NovaSeq 6000 run data?](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-faq-list/000006671.md)
- [Reference Material](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list.md)
- [Best practices for preparing and inspecting NovaSeq 6000 flow cells for sequencing](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000001311.md)
- [Best practices when updating to NovaSeq 6000 Control Software v1.8](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000007441.md)
- [Chemistry and Imaging on NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000008435.md)
- [Computer Hardware Specifications for NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000002428.md)
- [Consumable catalog numbers for the NovaSeq 6000 v1.5](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000003525.md)
- [File Paths on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000002426.md)
- [How To Power Cycle NovaSeq 6000 Video](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000005611.md)
- [How to Perform a System Health Check on the NovaSeq 6000 Video](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000005620.md)
- [How to add an Administrator account to Windows 10 Operating System on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000007867.md)
- [How to check flow cell vacuum pressure on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000005390.md)
- [How to configure a NovaSeq 6000, with Control Software 1.8.x or greater, to work with a Proxy Server](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000008299.md)
- [How to perform system checks on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000002495.md)
- [How to set the output location in the NovaSeq 6000 Control Software](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000001530.md)
- [How to set up a PhiX validation run on the NovaSeq 6000 sequencing platform](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000002881.md)
- [How to start a maintenance wash without used buffer cartridges on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000002512.md)
- [How to stop and restart Universal Copy Service manually on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000002543.md)
- [Index color balancing for the NovaSeq 6000 system](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000001931.md)
- [Introducing NovaSeq 6000 Control Software version 1.8](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000006664.md)
- [Minimum storage requirements to start a NovaSeq 6000 run](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000002425.md)
- [NovaSeq 6000 Introduction Support Webinar Video](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000008051.md)
- [NovaSeq 6000 library tube information](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000002420.md)
- [NovaSeq 6000 storage management and best practices](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000003495.md)
- [Reagent Cartridge Layout for NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000002215.md)
- [Real Time Analysis (RTA3) on NovaSeq 6000 Overview](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000002465.md)
- [Reference images for NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000002748.md)
- [Software Restriction Policy (SRP) on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000002466.md)
- [Specifications for the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000002669.md)
- [Thawing, stability, and storage of NovaSeq 6000 reagents](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000002421.md)
- [Troubleshooting Focus Camera (FTM) system check failure on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000002490.md)
- [Where are NovaSeq 6000 system check results located?](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000002493.md)
- [Xp reagents components and stability on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000002422.md)
- [测序前准备和检查NovaSeq 6000 流动槽的最佳操作](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-reference_material-list/000007097.md)
- [Troubleshooting](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list.md)
- [Best practices for starting staggered runs on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000006202.md)
- [How to troubleshoot D:\ drive full on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000001273.md)
- [How to troubleshoot NovaSeq 6000 Process Management errors](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000001296.md)
- [How to troubleshoot NovaSeq 6000 light bar issues](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000001286.md)
- [How to troubleshoot NovaSeq 6000 “A component failed during sequencing” error during a Cloud Outage](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000009026.md)
- [How to troubleshoot Reagent Selector Valve Errors on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000001302.md)
- [How to troubleshoot failed Pressure Decay or Impedance tests on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000002492.md)
- [How to troubleshoot failed to reach target temperature error on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000002523.md)
- [How to troubleshoot flow cell clamp or vacuum is unable to engage errors when loading flow cells on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000003046.md)
- [How to troubleshoot pre run check errors on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000001295.md)
- [How to troubleshoot runs listed as Uploading to Network or BaseSpace Sequence Hub on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000001305.md)
- [How to troubleshoot “A component failed during sequencing” error messages on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000001265.md)
- [NovaSeq 6000 Run Quality and Best Practices Support Webinar Video](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000007986.md)
- [Troubleshooting "Component Failed" errors immediately after Pre Run Checks on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000006548.md)
- [Troubleshooting "Instrument Shell has Stopped Working" on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000006676.md)
- [Troubleshooting "Unable to Generate a Focus Model" error on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000001306.md)
- [Troubleshooting "flow cell is not sufficiently level" error on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000005061.md)
- [Troubleshooting BIM SOUR 2 Handle Position Errors During NovaSeq 6000 System Checks](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000009238.md)
- [Troubleshooting Black Screen with EFI Shell message on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000008381.md)
- [Troubleshooting CE or Z:\ drive not connecting on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000001858.md)
- [Troubleshooting Fatal error, exiting application. Unable to find a device on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000005295.md)
- [Troubleshooting Network errors during run setup on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000001287.md)
- [Troubleshooting NovaSeq 6000 Control Software fails to initialize with Universal Copy Service error](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000002545.md)
- [Troubleshooting NovaSeq 6000 Reagent Chiller outside acceptable range warning](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000005499.md)
- [Troubleshooting NovaSeq 6000 failing to initialize control software at 94 95%](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000001277.md)
- [Troubleshooting NovaSeq 6000 flow cell loading issues Video](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000005612.md)
- [Troubleshooting NovaSeq 6000 optical alignment errors, BIRD warnings, and Objective Contamination](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000001269.md)
- [Troubleshooting NovaSeq 6000 reagent RFID failures](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000001297.md)
- [Troubleshooting Unable to Start Real Time Analysis on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000008431.md)
- [Troubleshooting decreased intensity and clusters passing filter at flow cell inlet on NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000006690.md)
- [Troubleshooting laser coolant temperature errors on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000003300.md)
- [Troubleshooting the "Unable to load recipe" error on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000007943.md)
- [Troubleshooting the large used reagent bottle is full error on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000005383.md)
- [Troubleshooting vacuum failures and flow cell vacuum is no longer engaged message on NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000001309.md)
- [Troubleshooting “Unable to Register Fiducial” error on the NovaSeq 6000](https://knowledge.illumina.com/instrumentation/novaseq-6000/instrumentation-novaseq-6000-troubleshooting-list/000001267.md)
- [Instrument Administration](https://knowledge.illumina.com/instrumentation/instrument-administration.md)
- [Troubleshooting](https://knowledge.illumina.com/instrumentation/instrument-administration/instrumentation-instrument-administration-troubleshooting-list.md)
- [Troubleshooting 'Installation failure. Check installed software and try again.' error](https://knowledge.illumina.com/instrumentation/instrument-administration/instrumentation-instrument-administration-troubleshooting-list/000007861.md)
- [Troubleshooting Local Run Manager Notification ‘Universal Copy Service does not use the same user’](https://knowledge.illumina.com/instrumentation/instrument-administration/instrumentation-instrument-administration-troubleshooting-list/000007839.md)
- [Troubleshooting Windows services menu shows Log On As options greyed out](https://knowledge.illumina.com/instrumentation/instrument-administration/instrumentation-instrument-administration-troubleshooting-list/000007862.md)
- [Reference Material](https://knowledge.illumina.com/instrumentation/instrument-administration/instrumentation-instrument-administration-reference_material-list.md)
- [How to confirm firewall settings and close port 29644 on NovaSeq 6000](https://knowledge.illumina.com/instrumentation/instrument-administration/instrumentation-instrument-administration-reference_material-list/000007848.md)
- [How to install Windows critical security updates](https://knowledge.illumina.com/instrumentation/instrument-administration/instrumentation-instrument-administration-reference_material-list/000002282.md)
- [How to switch user accounts on Illumina Windows 10 Sequencing System](https://knowledge.illumina.com/instrumentation/instrument-administration/instrumentation-instrument-administration-reference_material-list/000007855.md)
- [General](https://knowledge.illumina.com/library-preparation/general.md)
- [FAQ](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list.md)
- [Are the Illumina RNA Index Anchors the same in every well of the plate?](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000005793.md)
- [BLT PF reagent handling for the Illumina DNA PCR Free workflow questions](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000003454.md)
- [BLT PF usage FAQ for Illumina DNA PCR Free](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000003453.md)
- [Can RSB be used as a substitute for RSB + Tween when sequencing on the NextSeq 1000/2000?](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000005890.md)
- [Can samples be sent to Illumina for sequencing; does Illumina offer sequencing as a service?](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000005495.md)
- [Consumable FAQ for the Illumina 5 Base Whole Genome Sequencing (WGS) and Enrichment kits](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000009940.md)
- [Consumables and Equipment FAQ for the TruPath Genome assay](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000010166.md)
- [Control (GDMC and SFMC) FAQ for the Illumina 5 Base Whole Genome Sequencing and Enrichment kits](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000009943.md)
- [Design and coverage of the Respiratory Virus Oligos Panel v2 (RVOP v2)](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000003422.md)
- [Does library loading differ between MiSeq Micro and Nano flow cells?](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000005606.md)
- [FAQs on the Illumina DNA Prep, (M) Tagmentation Library Preparation protocol](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000001260.md)
- [Frequently Asked Questions for Illumina FFPE DNA Prep with Exome 2.5 Enrichment](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000009485.md)
- [General FAQ for Illumina Rapid RNA kits](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000010209.md)
- [General FAQ for the Illumina 5 Base WGS and Enrichment kits](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000009939.md)
- [General workflow FAQ for the Illumina 5 Base WGS and Enrichment kits](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000009946.md)
- [How many samples can be prepared with the Illumina Exome 2.5 panel?](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000009598.md)
- [How much PhiX to spike in for well balanced, base diverse libraries?](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000006972.md)
- [How to pool Illumina DNA Prep with Exome 2.5 libraries on the NextSeq series and NovaSeq 6000?](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000006988.md)
- [How to stagger sequences or heterogeneity spacers introduce diversity for amplicon libraries?](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000005581.md)
- [Hybridization Buffer (HT1) and Resuspension Buffer (RSB) alternatives and purchasing availability](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000005040.md)
- [IDT for Illumina TruSeq Unique Dual (UD) Index kit FAQs for kit configurations and usage](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000001878.md)
- [Information about the TruSeq index adapter plate fixture](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000005724.md)
- [Information and protocol for the Illumina 16S Metagenomics Sequencing Library Preparation workflow](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000005774.md)
- [Information on the Illumina DNA/RNA UD Indexes](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000008384.md)
- [Input recommendations for Illumina Rapid RNA Kits](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000010212.md)
- [Kits, consumables, and reagent stability FAQ for Illumina Rapid RNA Kits](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000010210.md)
- [Link to the Sequencing Methods Explorer](https://knowledge.illumina.com/library-preparation/general/library-preparation-general-faq-list/000006080.md)
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- [Performing a spike in of custom oligos into an AmpliSeq for Illumina Panel](https://knowledge.illumina.com/library-preparation/ampliseq/library-preparation-ampliseq-reference_material-list/000001238.md)
- [Plate layout for AmpliSeq Unique Dual (UD) indexes](https://knowledge.illumina.com/library-preparation/ampliseq/library-preparation-ampliseq-reference_material-list/000002334.md)
- [Plate layouts for Ampliseq Combinatorial Dual (CD) Indexes Sets A, B, C and D](https://knowledge.illumina.com/library-preparation/ampliseq/library-preparation-ampliseq-reference_material-list/000002333.md)
- [Amplicon Library Prep](https://knowledge.illumina.com/library-preparation/amplicon-library-prep.md)
- [FAQ](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-faq-list.md)
- [Information and protocol for the Illumina Fungal Metagenomics Sequencing workflow](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-faq-list/000005773.md)
- [Overview of the Fungal Metagenomic Sequencing Demonstrated Protocol](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-faq-list/000005829.md)
- [Turnaround time, throughput, and workflow requirements for COVIDSeq (RUO)](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-faq-list/000005436.md)
- [Viral Surveillance Panel (VSP) probes and panel design frequently asked questions (FAQs)](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-faq-list/000007433.md)
- [Reference Material](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-reference_material-list.md)
- [16S library preparation for the MiSeq i100 Series 25M Reagent Kit (1000 cycles)](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-reference_material-list/000010152.md)
- [Amplicon Sequencing Assessing the Success of Your Run Support Webinar Video](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-reference_material-list/000008058.md)
- [What Does a Typical 16S Run Look Like on a MiSeq?](https://knowledge.illumina.com/library-preparation/amplicon-library-prep/library-preparation-amplicon-library-prep-reference_material-list/000007820.md)
- [Custom Third party Library Prep](https://knowledge.illumina.com/library-preparation/custom-third-party-library-prep.md)
- [Reference Material](https://knowledge.illumina.com/library-preparation/custom-third-party-library-prep/library-preparation-custom-third-party-library-prep-reference_material-list.md)
- [Considerations when migrating non Illumina libraries between sequencing platforms](https://knowledge.illumina.com/library-preparation/custom-third-party-library-prep/library-preparation-custom-third-party-library-prep-reference_material-list/000001478.md)
- [FAQ](https://knowledge.illumina.com/library-preparation/custom-third-party-library-prep/library-preparation-custom-third-party-library-prep-faq-list.md)
- [Are the NextSeq 1000/2000 Standard SBS Read & Index Primer kits compatible XLEAP SBS Reagents?](https://knowledge.illumina.com/library-preparation/custom-third-party-library-prep/library-preparation-custom-third-party-library-prep-faq-list/000008920.md)
- [Bead clean up ratios used in the Illumina 16S Metagenomic Sequencing Library Preparation protocol](https://knowledge.illumina.com/library-preparation/custom-third-party-library-prep/library-preparation-custom-third-party-library-prep-faq-list/000006127.md)
- [DNA Enrichment Based Library Prep](https://knowledge.illumina.com/library-preparation/dna-enrichment-based-library-prep.md)
- [Reference Material](https://knowledge.illumina.com/library-preparation/dna-enrichment-based-library-prep/library-preparation-dna-enrichment-based-library-prep-reference_material-list.md)
- [Illumina DNA Prep with Enrichment Introduction Support Webinar Video](https://knowledge.illumina.com/library-preparation/dna-enrichment-based-library-prep/library-preparation-dna-enrichment-based-library-prep-reference_material-list/000008053.md)
- [FAQ](https://knowledge.illumina.com/library-preparation/dna-enrichment-based-library-prep/library-preparation-dna-enrichment-based-library-prep-faq-list.md)
- [Frequently asked questions (FAQ) for Illumina DNA Prep with Exome 2.5 Enrichment v2](https://knowledge.illumina.com/library-preparation/dna-enrichment-based-library-prep/library-preparation-dna-enrichment-based-library-prep-faq-list/000010119.md)
- [DNA Library Prep](https://knowledge.illumina.com/library-preparation/dna-library-prep.md)
- [FAQ](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list.md)
- [Analysis FAQ for Illumina DNA PCR Free libraries](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003440.md)
- [Bead size selection FAQ for Illumina DNA PCR Free](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003466.md)
- [Can FFPE input be used with the Illumina DNA PCR Free library preparation kit?](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003437.md)
- [Consumables used in Illumina DNA PCR Free workflow](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003448.md)
- [Denature and dilution FAQ for Illumina DNA PCR Free](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003444.md)
- [Differences between the Illumina DNA Prep (M) Tagmentation and Nextera XT kits](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000001256.md)
- [Does the Flex Lysis Kit require the purchase of additional Illumina reagents?](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000007307.md)
- [How does the Illumina/Nextera tagmentation enzyme make sure that both p5 and p7 adapters are added?](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000005831.md)
- [How to quantify and what is the expected yield for Illumina DNA PCR Free libraries?](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003477.md)
- [Illumina DNA PCR Free custom sequencing primer FAQ](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003445.md)
- [Index selection and FAQ for Illumina DNA PCR Free](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003471.md)
- [Indexing FAQ for Illumina DNA PCR Free libraries](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003474.md)
- [Input quantity for Illumina DNA PCR Free libraries](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003432.md)
- [Input recommendations FAQ for the TruPath Genome assay](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000010167.md)
- [Input types FAQ for Illumina DNA PCR Free libraries](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003438.md)
- [Instrument, flow cell, and reagent requirement FAQ for Illumina DNA PCR Free libraries](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003443.md)
- [Is the Nextera TDE1 enzyme pre loaded with oligos?](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000005467.md)
- [Library QC for the Illumina DNA Prep (M) Tagmentation Kit](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000001258.md)
- [Library storage FAQ for Illumina DNA PCR Free libraries](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003468.md)
- [Product capabilities and positioning FAQ for the TruPath Genome assay](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000010165.md)
- [Product page and support page for Illumina DNA Prep, (M) Tagmentation](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000005311.md)
- [Product page and support page links for Illumina DNA PCR Free](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000005053.md)
- [Product page and support page links for Illumina DNA Prep with Exome 2.5 Enrichment](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000007302.md)
- [Product page and support page links for Nextera XT](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000005164.md)
- [Qualification/QC FAQ for Illumina DNA PCR Free libraries](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003478.md)
- [Saliva collection for Illumina DNA PCR Free library preparation questions](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003434.md)
- [Saliva processing for Illumina DNA PCR Free library preparation workflow questions](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003435.md)
- [Sample Input for Illumina DNA Prep, (M) Tagmentation Library Preparation Kit](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000001262.md)
- [Sample batching with the Illumina DNA PCR Free kit questions](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003464.md)
- [Samples per sequencing run and coverage FAQ for Illumina DNA PCR Free](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003442.md)
- [Sequencing run setup software considerations FAQ for Illumina DNA PCR Free libraries](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003441.md)
- [Single or double sided bead clean ups with Illumina DNA PCR Free.](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003467.md)
- [Size selection and clean up considerations for TruSeq DNA PCR Free library preparation](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000002777.md)
- [Standard vs Low Input Workflow selection FAQ for Illumina DNA PCR Free prep](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003460.md)
- [TruSeq DNA PCR Free library preparation input](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000001182.md)
- [Using dried blood spots as input into the Illumina DNA PCR Free library prep kit questions](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003436.md)
- [What is the Illumina Lysis Reagent Kit, and when should it be used?](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000005931.md)
- [What loading concentration is recommended for Illumina DNA Prep on MiSeq v2 kits?](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000006995.md)
- [When to quantify libraries and method of quantification for Illumina DNA PCR Free libraries](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003476.md)
- [Which Nextera Index Kits come in plate or tube format?](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000002331.md)
- [Whole blood input requirements for Illumina DNA PCR Free](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-faq-list/000003433.md)
- [Reference Material](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-reference_material-list.md)
- [Considerations before starting the Illumina DNA PCR Free library preparation](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-reference_material-list/000003430.md)
- [Considerations for choosing an Illumina DNA PCR Free library preparation workflow](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-reference_material-list/000005264.md)
- [Illumina DNA PCR Free Tagmentation Introduction Support Webinar Video](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-reference_material-list/000008037.md)
- [Illumina DNA Prep Tagmentation Introduction Support Webinar Video](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-reference_material-list/000008038.md)
- [Library quantification and manual normalization of Nextera XT libraries](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-reference_material-list/000001145.md)
- [Nextera XT Library Preparation tips and troubleshooting technical support note](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-reference_material-list/000006093.md)
- [Nextera XT Sample Preparation and Usage Support Webinar Video](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-reference_material-list/000008054.md)
- [Nextera XT input considerations](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-reference_material-list/000001023.md)
- [Optimizing coverage for targeted resequencing](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-reference_material-list/000001409.md)
- [Plate layout for Nextera DNA Combinatorial Dual (CD) indexes](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-reference_material-list/000002339.md)
- [Product page and support page for TruSeq DNA Nano](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-reference_material-list/000005222.md)
- [Product page and support page for TruSeq DNA PCR Free](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-reference_material-list/000005223.md)
- [Sequencing information for Illumina DNA Prep (M) Tagmentation libraries](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-reference_material-list/000001263.md)
- [What reagents are available for ATAC Seq library preparation?](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-reference_material-list/000001817.md)
- [双链DNA文库浓度的计算：从质量浓度(ng/µl)转化为摩尔浓度(nM)的换算公式](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-reference_material-list/000007413.md)
- [Troubleshooting](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-troubleshooting-list.md)
- [Overtagmentation of Nextera XT libraries](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-troubleshooting-list/000001054.md)
- [Undertagmentation of Nextera XT libraries](https://knowledge.illumina.com/library-preparation/dna-library-prep/library-preparation-dna-library-prep-troubleshooting-list/000001148.md)
- [Enrichment Based Library Prep](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep.md)
- [Reference Material](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-reference_material-list.md)
- [Illumina DNA Prep with Enrichment third party probe panel requirements](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-reference_material-list/000007483.md)
- [Illumina DNA Prep with Enrichment – Tagmentation: Best Practices and Troubleshooting Video](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-reference_material-list/000005790.md)
- [Illumina DNA Prep with Enrichment（原Nextera Flex for Enrichment）第三方panel要求](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-reference_material-list/000007100.md)
- [Illumina RNA Prep with Enrichment Introduction Support Webinar Video](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-reference_material-list/000008036.md)
- [Library quantification and QC for Illumina TruSight RNA Pan Cancer libraries](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-reference_material-list/000003258.md)
- [Product page and support page for Illumina Viral Surveillance Panel V2 Kit](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-reference_material-list/000009712.md)
- [Product page and support page links for Illumina Cell Free DNA Prep with Enrichment](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-reference_material-list/000009066.md)
- [Product page and support page links for Illumina DNA Prep with Exome 2.5 Enrichment v2](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-reference_material-list/000010153.md)
- [TruSight RNA Fusion Panel product page and support page links](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-reference_material-list/000005517.md)
- [TruSight RNA Pan Cancer Panel product page and support page links](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-reference_material-list/000005518.md)
- [Understanding library pooling for Illumina enrichment kits](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-reference_material-list/000001246.md)
- [FAQ](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-faq-list.md)
- [How many samples can be prepared with the Respiratory Pathogen ID/AMR Enrichment Panel (RPIP) Kit?](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-faq-list/000006700.md)
- [Illumina RNA Prep Tagmentation (L) with Enrichment Input FAQs](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-faq-list/000003293.md)
- [Illumina RNA Prep Tagmentation (L) with Enrichment Sequencing FAQs](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-faq-list/000003295.md)
- [Is there a gene list for the Illumina Coding Exome Panel?](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-faq-list/000005819.md)
- [Product page and support page for the Respiratory Pathogen ID/AMR Enrichment Panel (RPIP) Kit](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-faq-list/000006696.md)
- [Viral Surveillance Panel (VSP) reagents and workflow frequently asked questions (FAQs)](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-faq-list/000009080.md)
- [Viral Surveillance Panel (VSP) sequencing and analysis frequently asked questions (FAQs)](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-faq-list/000009081.md)
- [What are the volume and number of enrichment reactions for Illumina Exome Panel (CEX)?](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-faq-list/000007172.md)
- [What read length and coverage depth should be used for the Urinary Pathogen ID/AMR Panel?](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-faq-list/000007802.md)
- [Workflow Optimization by Modulating SMB4 Volume for Illumina DNA Prep with Exome 2.5 Enrichment v2](https://knowledge.illumina.com/library-preparation/enrichment-based-library-prep/library-preparation-enrichment-based-library-prep-faq-list/000010120.md)
- [Epigenetics Library Prep](https://knowledge.illumina.com/library-preparation/epigenetics-library-prep.md)
- [Reference Material](https://knowledge.illumina.com/library-preparation/epigenetics-library-prep/library-preparation-epigenetics-library-prep-reference_material-list.md)
- [Product page and support page links for Illumina 5 Base DNA Prep with Enrichment](https://knowledge.illumina.com/library-preparation/epigenetics-library-prep/library-preparation-epigenetics-library-prep-reference_material-list/000010150.md)
- [Product page and support page links for Illumina 5 Base DNA Prep](https://knowledge.illumina.com/library-preparation/epigenetics-library-prep/library-preparation-epigenetics-library-prep-reference_material-list/000010149.md)
- [FAQ](https://knowledge.illumina.com/library-preparation/epigenetics-library-prep/library-preparation-epigenetics-library-prep-faq-list.md)
- [Enrichment Panels and DesignStudio FAQ for the Illumina 5 Base WGS and Enrichment kits](https://knowledge.illumina.com/library-preparation/epigenetics-library-prep/library-preparation-epigenetics-library-prep-faq-list/000009944.md)
- [Input recommendations for the Illumina 5 Base WGS and Enrichment kits](https://knowledge.illumina.com/library-preparation/epigenetics-library-prep/library-preparation-epigenetics-library-prep-faq-list/000009945.md)
- [Sequencing FAQ for the Illumina 5 Base WGS and Enrichment kits](https://knowledge.illumina.com/library-preparation/epigenetics-library-prep/library-preparation-epigenetics-library-prep-faq-list/000009949.md)
- [General Library Prep](https://knowledge.illumina.com/library-preparation/general-library-prep.md)
- [Troubleshooting](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-troubleshooting-list.md)
- [Troubleshooting elevated PhiX alignment in sequencing runs](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-troubleshooting-list/000009236.md)
- [FAQ](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-faq-list.md)
- [Can library preparation reagents be stored in a frost free freezer?](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-faq-list/000005798.md)
- [How to perform library heat denaturation (heat shock) before sequencing?](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-faq-list/000005129.md)
- [How to prepare < 2 nM libraries for sequencing on NovaSeq X/X Plus](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-faq-list/000009000.md)
- [Indexed Sequencing workflows with 5' to 3' directionality](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-faq-list/000005679.md)
- [What are the Illumina sequencing primer sequences?](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-faq-list/000007129.md)
- [Where to find the reference sequence used for phiX alignment?](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-faq-list/000005582.md)
- [Reference Material](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list.md)
- [Adapter dimers causes, effects, and how to remove them](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000001911.md)
- [Bead types in Illumina library preparation kits](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000003342.md)
- [Best practices for library quantification](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000003750.md)
- [Best practices for manually normalizing library concentrations](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000001252.md)
- [Bubble products in sequencing libraries: causes, identification, and workflow recommendations](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000001918.md)
- [Converting ng/µl to nM when calculating dsDNA library concentration](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000001240.md)
- [DNA/RNA isolation considerations when using Illumina library prep kits](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000001249.md)
- [Double sided size selection and bead clean up](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000006157.md)
- [How to Plan Your First Sequencing Project Support Webinar Video](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000008042.md)
- [How to mitigate index hopping](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000001928.md)
- [How to view more content and products relevant to specific fields of interest on the Illumina website](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000002704.md)
- [IDT for Illumina DNA/RNA Unique Dual Index Compatibility on the MiniSeq](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000002045.md)
- [Illumina library applications for 2x500 bp sequencing on the MiSeq i100](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000009958.md)
- [Is it possible to pool different library types in the same sequencing run?](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000003284.md)
- [Library quantification and quality control quick reference guide](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000001247.md)
- [Understanding the differences between Illumina index chemistries and anchor function](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000006561.md)
- [What is the PhiX Control v3 Library and what is its function in Illumina Next Generation Sequencing](https://knowledge.illumina.com/library-preparation/general-library-prep/library-preparation-general-library-prep-reference_material-list/000001545.md)
- [Illumina Single Cell RNA Prep](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep.md)
- [FAQ](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-faq-list.md)
- [Illumina Single Cell 3' RNA demonstrated cell and sample types](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-faq-list/000009642.md)
- [Validated plasticware for PIPs handling in Illumina Single Cell 3’ RNA Prep](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-faq-list/000009621.md)
- [What is the maximum cell size that can be captured in Illumina Single Cell kits?](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-faq-list/000009828.md)
- [Reference Material](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-reference_material-list.md)
- [Illumina Single Cell 3' RNA Prep, T10 Workflow (Video)](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-reference_material-list/000010032.md)
- [Illumina Single Cell 3' RNA Prep, T100 workflow (Video)](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-reference_material-list/000010033.md)
- [Illumina Single Cell 3' RNA Prep, T2 Workflow (Video)](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-reference_material-list/000010034.md)
- [Illumina Single Cell 3' RNA Prep, T20 Workflow (Video)](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-reference_material-list/000010035.md)
- [Illumina Single Cell 3’ RNA Prep Workflow Support Webinar Video](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-reference_material-list/000010146.md)
- [Illumina Single Cell 3’ RNA Prep cDNA QC best practices](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-reference_material-list/000009523.md)
- [Illumina Single Cell 3’ RNA Prep library QC best practices](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-reference_material-list/000009526.md)
- [Product page and support page links for Illumina Single Cell 3’ RNA Prep](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-reference_material-list/000010148.md)
- [Representative cDNA QC traces for Illumina Single Cell 3’ RNA Prep](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-reference_material-list/000009525.md)
- [Representative library QC traces for Illumina Single Cell 3’ RNA Prep](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-reference_material-list/000009528.md)
- [Sample Enrichment Best Practices for Illumina Single Cell 3' RNA Prep](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-reference_material-list/000009511.md)
- [Selecting cycle numbers for High and Low RNA sample types with Illumina Single Cell RNA prep kits](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-reference_material-list/000009521.md)
- [Shelf life of Illumina Single Cell 3' RNA Prep kits](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-reference_material-list/000009476.md)
- [Supplemental Enrichment and Amplification (SEA) primer design for Illumina Single Cell RNA Kits](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-reference_material-list/000009605.md)
- [The importance of pilot studies for Illumina Single Cell RNA Preparation prior to workflow changes](https://knowledge.illumina.com/library-preparation/illumina-single-cell-rna-prep/library-preparation-illumina-single-cell-rna-prep-reference_material-list/000009517.md)
- [Illumina Single Cell](https://knowledge.illumina.com/library-preparation/illumina-single-cell.md)
- [FAQ](https://knowledge.illumina.com/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-faq-list.md)
- [Can vortexing damage cells/nuclei when generating emulsions in the Illumina Single Cell workflow?](https://knowledge.illumina.com/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-faq-list/000009458.md)
- [Reference Material](https://knowledge.illumina.com/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list.md)
- [0.8X bead cleanup to remove adapter dimers from Illumina Single Cell 3’ RNA Prep libraries](https://knowledge.illumina.com/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009534.md)
- [Assessing cDNA QC in Illumina Single Cell 3' RNA Prep](https://knowledge.illumina.com/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009524.md)
- [Assessing library QC in Illumina Single Cell 3' RNA Prep](https://knowledge.illumina.com/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009527.md)
- [Best Practices for Nuclei Isolation with alternative isolation protocols for Illumina Single Cell](https://knowledge.illumina.com/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009451.md)
- [Best practices for cell preparation for Illumina Single Cell 3' RNA prep](https://knowledge.illumina.com/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009437.md)
- [Best practices for pipette mixing PIPs and cells/nuclei in Illumina Single Cell 3' RNA Prep](https://knowledge.illumina.com/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009709.md)
- [Best practices for using Illumina Single Cell Nuclei Isolation Kits for Illumina Single Cell kits](https://knowledge.illumina.com/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009450.md)
- [Cell input and volume loading recommendations for Illumina Single Cell 3' RNA Prep](https://knowledge.illumina.com/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009473.md)
- [Extending cDNA storage time in Illumina Single Cell 3' RNA Prep](https://knowledge.illumina.com/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009394.md)
- [How to determine the required sequencing read depth for the Illumina Single Cell 3' RNA libraries?](https://knowledge.illumina.com/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009561.md)
- [Illumina Single Cell 3' RNA Preparation library sequencing read length and loading concentrations](https://knowledge.illumina.com/library-preparation/illumina-single-cell/library-preparation-illumina-single-cell-reference_material-list/000009449.md)
- [Index kits](https://knowledge.illumina.com/library-preparation/index-kits.md)
- [Reference Material](https://knowledge.illumina.com/library-preparation/index-kits/library-preparation-index-kits-reference_material-list.md)
- [Plate layouts for IDT for Illumina DNA/RNA UD Index kits, Sets A, B, C, and D](https://knowledge.illumina.com/library-preparation/index-kits/library-preparation-index-kits-reference_material-list/000002338.md)
- [FAQ](https://knowledge.illumina.com/library-preparation/index-kits/library-preparation-index-kits-faq-list.md)
- [Can Illumina and IDT for Illumina DNA/RNA UD Indexes be used with the 16S Metagenomics Protocol?](https://knowledge.illumina.com/library-preparation/index-kits/library-preparation-index-kits-faq-list/000005766.md)
- [Can wells in index plates be used more than once?](https://knowledge.illumina.com/library-preparation/index-kits/library-preparation-index-kits-faq-list/000005240.md)
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- [Multiomics Library Prep](https://knowledge.illumina.com/library-preparation/multiomics-library-prep.md)
- [Reference Material](https://knowledge.illumina.com/library-preparation/multiomics-library-prep/library-preparation-multiomics-library-prep-reference_material-list.md)
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- [Product page and support page links for Illumina TruPath Genome](https://knowledge.illumina.com/library-preparation/multiomics-library-prep/library-preparation-multiomics-library-prep-reference_material-list/000010163.md)
- [FAQ](https://knowledge.illumina.com/library-preparation/multiomics-library-prep/library-preparation-multiomics-library-prep-faq-list.md)
- [Enrichment workflow FAQ for the Illumina 5 Base DNA Prep with Enrichment kit](https://knowledge.illumina.com/library-preparation/multiomics-library-prep/library-preparation-multiomics-library-prep-faq-list/000009947.md)
- [ILASS frequently asked questions for the Illumina Protein Prep Automation System (IPPAS)](https://knowledge.illumina.com/library-preparation/multiomics-library-prep/library-preparation-multiomics-library-prep-faq-list/000009788.md)
- [Input and sample collection for the Illumina Protein Prep (IPP)](https://knowledge.illumina.com/library-preparation/multiomics-library-prep/library-preparation-multiomics-library-prep-faq-list/000009781.md)
- [Methylation Control Panel FAQ for the Illumina 5 Base WGS and Enrichment kits](https://knowledge.illumina.com/library-preparation/multiomics-library-prep/library-preparation-multiomics-library-prep-faq-list/000009938.md)
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- [Sequencing run parameters and setup for Illumina Protein Prep (IPP) libraries](https://knowledge.illumina.com/library-preparation/multiomics-library-prep/library-preparation-multiomics-library-prep-faq-list/000009802.md)
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- [Third Party equipment frequently asked questions for the Illumina Protein Prep Automation System (IPPAS)](https://knowledge.illumina.com/library-preparation/multiomics-library-prep/library-preparation-multiomics-library-prep-faq-list/000009799.md)
- [UMI and index FAQ for the Illumina 5 Base Whole Genome Sequencing (WGS) and Enrichment kits](https://knowledge.illumina.com/library-preparation/multiomics-library-prep/library-preparation-multiomics-library-prep-faq-list/000009942.md)
- [Workflow frequently asked questions for the Illumina Protein Prep Automation System (IPPAS)](https://knowledge.illumina.com/library-preparation/multiomics-library-prep/library-preparation-multiomics-library-prep-faq-list/000009786.md)
- [RNA Enrichment Based Library Prep](https://knowledge.illumina.com/library-preparation/rna-enrichment-based-library-prep.md)
- [Reference Material](https://knowledge.illumina.com/library-preparation/rna-enrichment-based-library-prep/library-preparation-rna-enrichment-based-library-prep-reference_material-list.md)
- [Capture and wash best practices for Illumina RNA Prep with Enrichment (L) Tagmentation](https://knowledge.illumina.com/library-preparation/rna-enrichment-based-library-prep/library-preparation-rna-enrichment-based-library-prep-reference_material-list/000003311.md)
- [FAQ](https://knowledge.illumina.com/library-preparation/rna-enrichment-based-library-prep/library-preparation-rna-enrichment-based-library-prep-faq-list.md)
- [Can Illumina RNA Prep with Enrichment library prep and enrichment reagents be purchased separately?](https://knowledge.illumina.com/library-preparation/rna-enrichment-based-library-prep/library-preparation-rna-enrichment-based-library-prep-faq-list/000006623.md)
- [Enrichment probe design FAQ for Illumina Rapid RNA kits](https://knowledge.illumina.com/library-preparation/rna-enrichment-based-library-prep/library-preparation-rna-enrichment-based-library-prep-faq-list/000010211.md)
- [Illumina RNA Prep with Enrichment, (L) Tagmentation General FAQs](https://knowledge.illumina.com/library-preparation/rna-enrichment-based-library-prep/library-preparation-rna-enrichment-based-library-prep-faq-list/000003103.md)
- [Illumina RNA Prep with Enrichment, (L) Tagmentation Protocol FAQs](https://knowledge.illumina.com/library-preparation/rna-enrichment-based-library-prep/library-preparation-rna-enrichment-based-library-prep-faq-list/000003294.md)
- [RNA Library Prep](https://knowledge.illumina.com/library-preparation/rna-library-prep.md)
- [Reference Material](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-reference_material-list.md)
- [Anchor ligation best practices for Illumina Stranded mRNA and Total RNA Prep Ligation workflows](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-reference_material-list/000003309.md)
- [Best practices to minimize rRNA contamination in TruSeq Stranded Total RNA libraries](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-reference_material-list/000001921.md)
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- [General best practices for Illumina RNA library preparation kits](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-reference_material-list/000003306.md)
- [PhiX requirements for sequencing Illumina Stranded RNA libraries](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-reference_material-list/000003708.md)
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- [Frequently asked questions regarding the Ribo Zero Plant and Globin kits.](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-faq-list/000001153.md)
- [General information on Ribo Zero Plus Microbiome](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-faq-list/000006974.md)
- [Illumina Stranded Total RNA Prep, Ligation with Ribo Zero Plus FAQs](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-faq-list/000003152.md)
- [Illumina Stranded mRNA Prep Ligation General FAQs](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-faq-list/000003151.md)
- [Illumina Stranded mRNA Prep Ligation Input FAQs](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-faq-list/000003289.md)
- [Illumina Stranded mRNA Prep Ligation Protocol FAQs](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-faq-list/000003290.md)
- [Illumina Stranded mRNA Prep Ligation Sequencing FAQs](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-faq-list/000003291.md)
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- [Sequencing TruSeq Small RNA libraries](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-faq-list/000001399.md)
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- [TruSeq RNA v2 product and support page links](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-faq-list/000005656.md)
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- [TruSeq Stranded RNA bead clean up and library size information](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-faq-list/000001155.md)
- [TruSeq Stranded RNA kit storage and freeze/thaw recommendations](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-faq-list/000001152.md)
- [TruSeq Stranded RNA library preparation input requirements](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-faq-list/000001154.md)
- [TruSeq Stranded mRNA Product and Support Pages](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-faq-list/000005653.md)
- [What are the main differences between TruSeq Stranded and Illumina Stranded kits?](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-faq-list/000005928.md)
- [What volume of TruSeq RNA UD indexes should be used during TruSeq Stranded RNA library preparation?](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-faq-list/000005769.md)
- [mRNA purification and rRNA removal information for TruSeq Stranded RNA workflows](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-faq-list/000001232.md)
- [Troubleshooting](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-troubleshooting-list.md)
- [How to assess rRNA depletion in the TruSeq Stranded Total RNA workflow](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-troubleshooting-list/000002918.md)
- [Impact of RNA degradation on mRNA seq data](https://knowledge.illumina.com/library-preparation/rna-library-prep/library-preparation-rna-library-prep-troubleshooting-list/000002731.md)
- [TruSight Oncology Tumor Library Prep](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor-library-prep.md)
- [FAQ](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor-library-prep/library-preparation-trusight-oncology-tumor-library-prep-faq-list.md)
- [How many freeze thaw cycles can TruSight Tumor 15 (TST15) library preparation reagents undergo?](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor-library-prep/library-preparation-trusight-oncology-tumor-library-prep-faq-list/000008398.md)
- [Reference Material](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor-library-prep/library-preparation-trusight-oncology-tumor-library-prep-reference_material-list.md)
- [Freeze thaw stability and shelf life of TSO500 family automation library preparation kits](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor-library-prep/library-preparation-trusight-oncology-tumor-library-prep-reference_material-list/000003794.md)
- [Freeze thaw stability of TruSight Oncology 500 (TSO500) ctDNA (v1 and v2) input and reagents](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor-library-prep/library-preparation-trusight-oncology-tumor-library-prep-reference_material-list/000002919.md)
- [General information regarding RNA samples in the TruSight Oncology 500 (TSO500) v1 and v2 workflows](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor-library-prep/library-preparation-trusight-oncology-tumor-library-prep-reference_material-list/000003171.md)
- [Sequencing and coverage recommendations for TruSight Oncology 500 (TSO500) ctDNA v2](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor-library-prep/library-preparation-trusight-oncology-tumor-library-prep-reference_material-list/000002931.md)
- [Trusight Oncology Tumor](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor.md)
- [FAQ](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor/library-preparation-trusight-oncology-tumor-faq-list.md)
- [Can DNA fusion calling be performed with TruSight Oncology 500 (TSO500) Tissue data?](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor/library-preparation-trusight-oncology-tumor-faq-list/000002972.md)
- [Product page and support links for TruSight Oncology 500 (Solid)](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor/library-preparation-trusight-oncology-tumor-faq-list/000005143.md)
- [Product page and support links for TruSight Oncology 500 High Throughput (TSO500 HT)](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor/library-preparation-trusight-oncology-tumor-faq-list/000005145.md)
- [Product page and support links for TruSight Oncology 500 ctDNA](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor/library-preparation-trusight-oncology-tumor-faq-list/000005144.md)
- [Product page and support links for TruSight Oncology UMI Reagents](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor/library-preparation-trusight-oncology-tumor-faq-list/000005146.md)
- [Temperature sensitivity and reagent handling FAQ for TruSight Oncology 500 (TSO500) ctDNA](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor/library-preparation-trusight-oncology-tumor-faq-list/000002921.md)
- [TruSight Oncology 500 ctDNA liquid biopsy information](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor/library-preparation-trusight-oncology-tumor-faq-list/000002892.md)
- [Reference Material](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor/library-preparation-trusight-oncology-tumor-reference_material-list.md)
- [Limit of detection (LOD) for the TruSight Oncology 500 (TSO500) ctDNA assay](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor/library-preparation-trusight-oncology-tumor-reference_material-list/000003008.md)
- [Supported pooling plexities for TruSight Oncology 500 High Throughput (TSO500HT) libraries](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor/library-preparation-trusight-oncology-tumor-reference_material-list/000002809.md)
- [TruSight Oncology 500 and TruSight Oncology 500 HT Introduction & Overview Support Webinar Video](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor/library-preparation-trusight-oncology-tumor-reference_material-list/000008046.md)
- [TruSight Tumor 170 product page and support page links](https://knowledge.illumina.com/library-preparation/trusight-oncology-tumor/library-preparation-trusight-oncology-tumor-reference_material-list/000005520.md)
- [General](https://knowledge.illumina.com/microarray/general.md)
- [Troubleshooting](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list.md)
- [BlueFuse Multi: How to re center Log R Ratio (LRR) line](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000003859.md)
- [Create a batch file for simple BeadChip accessioning to Illumina Microarray Analytics PGx Analysis](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000005887.md)
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- [How to configure the NextSeq 550 for BeadArray Scanning](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000005236.md)
- [How to create region not called by the algorithm for BeadArray data in BlueFuse Multi](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000005044.md)
- [How to identify which Manifest and Cluster Files were used to generate a GTC File](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000001484.md)
- [How to include only selected SNPs when exporting a Final Report in GenomeStudio 2.0](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000005451.md)
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- [How to recoat Infinium BeadChip with XC4](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000003735.md)
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- [Infinium Assay Hybridization and XStain Troubleshooting Guide](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000005025.md)
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- [Switching between AutoLoader Mode and Manual Mode when using iScan](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000005545.md)
- [Troubleshooting "Error in reading file Normalization Transformation incorrect version" in Array ACLI](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000007824.md)
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- [Troubleshooting DRAGEN Array Cloud error Sample sheet missing required columns](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000010004.md)
- [Troubleshooting GenomeStudio "Error writing data beyond end of sample"](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000003031.md)
- [Troubleshooting the Infinium HD FFPE QC Assay Protocol](https://knowledge.illumina.com/microarray/general/microarray-general-troubleshooting-list/000007905.md)
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- [FAQ](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list.md)
- [Can Infinium BeadChips that have been frozen still be used?](https://knowledge.illumina.com/microarray/general/microarray-general-faq-list/000005924.md)
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- [How to set up a Private Domain on Illumina Connected Analytics for DRAGEN Array Cloud Analysis](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000005851.md)
- [How to share BaseSpace Microarray project data](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000009052.md)
- [How to use the Auxiliary File for Infinium BeadChips with Enhanced PGx Content](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008505.md)
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- [Sample sheet guidelines for GenomeStudio Genotyping and Methylation](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000003223.md)
- [Scan features differences between the iScan and NextSeq 550](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008353.md)
- [Simple guidelines for identifying top/bottom (TOP/BOT) strand and A/B allele](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001521.md)
- [Tecan/IAPS with ILASS Power Cycle Instructions](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008647.md)
- [The correct storage temperature for Infinium BeadChips is 2 8°C](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000002839.md)
- [Tips and tricks for downloading DMAPs using the Decode File Client](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001523.md)
- [Types of reports generated in GenomeStudio Genotyping Module v2.0](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000002861.md)
- [What are the ctl probes in the Infinium Methylation Array manifest?](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000009599.md)
- [What does Chr or MapInfo = 0 mean in Infinium genotyping array manifest files?](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001423.md)
- [What is the Content Descriptor file in GenomeStudio 2011.1 Methylation Module?](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000003030.md)
- [Where to find Microarray sample quality metrics in DRAGEN Array Cytogenetics and Emedgene](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000009271.md)
- [Where to find required license keys / serial numbers for installation of GenomeStudio 2011.1](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000003536.md)
- [Which Bisulfite Conversion Kit should be used for Infinium Methylation Arrays?](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000001524.md)
- [Which files are required and optional when creating a GenomeStudio project?](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000002888.md)
- [Why is the DRAGEN Array VCF output for mitochondrial loci showing only 0 or 1 in the GT field?](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000010079.md)
- [Why there may be multiple assays targeting the same SNP marker in array manifests](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000002975.md)
- [XStain glass back plate care recommendations for Infinium EX Assays](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000008440.md)
- [所有Infinium 芯片的DMAP文件自生产之日起两年内可下载](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000007140.md)
- [确认TOP/BOT链和A/B等位基因的基本规则](https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000007135.md)
- [Ancillary Array Equipment](https://knowledge.illumina.com/microarray/ancillary-array-equipment.md)
- [Reference Material](https://knowledge.illumina.com/microarray/ancillary-array-equipment/microarray-ancillary-array-equipment-reference_material-list.md)
- [Resetting the TeFlow Water Re Circulator Air Filter Alarm](https://knowledge.illumina.com/microarray/ancillary-array-equipment/microarray-ancillary-array-equipment-reference_material-list/000001518.md)
- [Updated guidance for using new blue Infinium Staining Set](https://knowledge.illumina.com/microarray/ancillary-array-equipment/microarray-ancillary-array-equipment-reference_material-list/000009390.md)
- [FAQ](https://knowledge.illumina.com/microarray/ancillary-array-equipment/microarray-ancillary-array-equipment-faq-list.md)
- [What are the dimensions of the Infinium hybridization oven?](https://knowledge.illumina.com/microarray/ancillary-array-equipment/microarray-ancillary-array-equipment-faq-list/000009343.md)
- [Auxiliary Equipment](https://knowledge.illumina.com/microarray/auxiliary-equipment.md)
- [Reference Material](https://knowledge.illumina.com/microarray/auxiliary-equipment/microarray-auxiliary-equipment-reference_material-list.md)
- [Equipment used in the Infinium XT protocol](https://knowledge.illumina.com/microarray/auxiliary-equipment/microarray-auxiliary-equipment-reference_material-list/000006249.md)
- [BlueFuse Multi](https://knowledge.illumina.com/microarray/bluefuse-multi.md)
- [Troubleshooting](https://knowledge.illumina.com/microarray/bluefuse-multi/microarray-bluefuse-multi-troubleshooting-list.md)
- [Important file types for analysis of BeadArray data in BlueFuse Multi](https://knowledge.illumina.com/microarray/bluefuse-multi/microarray-bluefuse-multi-troubleshooting-list/000005043.md)
- [DRAGEN Array](https://knowledge.illumina.com/microarray/dragen-array.md)
- [Troubleshooting](https://knowledge.illumina.com/microarray/dragen-array/microarray-dragen-array-troubleshooting-list.md)
- [Troubleshooting Windows Error: 0x80010135: Path too long when extracting DRAGEN Array Local zip file](https://knowledge.illumina.com/microarray/dragen-array/microarray-dragen-array-troubleshooting-list/000010205.md)
- [DRAGEN](https://knowledge.illumina.com/microarray/dragen.md)
- [\[Troubleshooting\]](https://knowledge.illumina.com/microarray/dragen/troubleshooting.md)
- [Reference Material](https://knowledge.illumina.com/microarray/dragen/microarray-dragen-reference_material-list.md)
- [How to set up a DRAGEN array cloud analysis run (Video)](https://knowledge.illumina.com/microarray/dragen/microarray-dragen-reference_material-list/000010036.md)
- [Decode File Client Software](https://knowledge.illumina.com/microarray/decode-file-client-software.md)
- [Troubleshooting](https://knowledge.illumina.com/microarray/decode-file-client-software/microarray-decode-file-client-software-troubleshooting-list.md)
- [Decode File Client Troubleshooting Guide](https://knowledge.illumina.com/microarray/decode-file-client-software/microarray-decode-file-client-software-troubleshooting-list/000001426.md)
- [Hamilton](https://knowledge.illumina.com/microarray/hamilton.md)
- [Reference Material](https://knowledge.illumina.com/microarray/hamilton/microarray-hamilton-reference_material-list.md)
- [Infinium Amplification System (IAS Hamilton) power cycle instructions](https://knowledge.illumina.com/microarray/hamilton/microarray-hamilton-reference_material-list/000009014.md)
- [Human Genotyping](https://knowledge.illumina.com/microarray/human-genotyping.md)
- [Troubleshooting](https://knowledge.illumina.com/microarray/human-genotyping/microarray-human-genotyping-troubleshooting-list.md)
- [How to check Infinium samples for possible cross sample contamination in GenomeStudio](https://knowledge.illumina.com/microarray/human-genotyping/microarray-human-genotyping-troubleshooting-list/000002130.md)
- [Reference Material](https://knowledge.illumina.com/microarray/human-genotyping/microarray-human-genotyping-reference_material-list.md)
- [How to change the date format in the GenomeStudio Final Report in the Processing Date Field](https://knowledge.illumina.com/microarray/human-genotyping/microarray-human-genotyping-reference_material-list/000005246.md)
- [LIMS](https://knowledge.illumina.com/microarray/lims.md)
- [Reference Material](https://knowledge.illumina.com/microarray/lims/microarray-lims-reference_material-list.md)
- [Investigation of Log4j Vulnerability with Illumina LIMS](https://knowledge.illumina.com/microarray/lims/microarray-lims-reference_material-list/000006336.md)
- [The required version of Java for Illumina LIMS is Java 8 for the foreseeable future](https://knowledge.illumina.com/microarray/lims/microarray-lims-reference_material-list/000001706.md)
- [Troubleshooting](https://knowledge.illumina.com/microarray/lims/microarray-lims-troubleshooting-list.md)
- [How to look up DMAP file retention settings in Illumina LIMS Project Manager](https://knowledge.illumina.com/microarray/lims/microarray-lims-troubleshooting-list/000006271.md)
- [Non human Methylation](https://knowledge.illumina.com/microarray/non-human-methylation.md)
- [Reference Material](https://knowledge.illumina.com/microarray/non-human-methylation/microarray-non-human-methylation-reference_material-list.md)
- [DNA Input Guidelines for Infinium MethylationEPIC Arrays](https://knowledge.illumina.com/microarray/non-human-methylation/microarray-non-human-methylation-reference_material-list/000002679.md)
- [How to use BeadArray Controls Reporter (BACR) to quickly analyze Infinium Methylation Array Control Data](https://knowledge.illumina.com/microarray/non-human-methylation/microarray-non-human-methylation-reference_material-list/000003398.md)
- [Infinium HD Methylation assay workflow for fresh/frozen versus FFPE samples](https://knowledge.illumina.com/microarray/non-human-methylation/microarray-non-human-methylation-reference_material-list/000001566.md)
- [Troubleshooting](https://knowledge.illumina.com/microarray/non-human-methylation/microarray-non-human-methylation-troubleshooting-list.md)
- [How to obtain Unmethylated and Methylated signal in GenomeStudio for each CpG in the Infinium MethylationEPIC Array](https://knowledge.illumina.com/microarray/non-human-methylation/microarray-non-human-methylation-troubleshooting-list/000006306.md)
- [Other Illumina Array Software](https://knowledge.illumina.com/microarray/other-illumina-array-software.md)
- [Reference Material](https://knowledge.illumina.com/microarray/other-illumina-array-software/microarray-other-illumina-array-software-reference_material-list.md)
- [Using Beeline to regenerate GTC files with an alternate cluster file or manifest file](https://knowledge.illumina.com/microarray/other-illumina-array-software/microarray-other-illumina-array-software-reference_material-list/000002205.md)
- [Tecan IAPS](https://knowledge.illumina.com/microarray/tecan-iaps.md)
- [FAQ](https://knowledge.illumina.com/microarray/tecan-iaps/microarray-tecan-iaps-faq-list.md)
- [Cleaning agents specifications and applications for Tecan (LiHa and RoMa) parts](https://knowledge.illumina.com/microarray/tecan-iaps/microarray-tecan-iaps-faq-list/000007003.md)
- [What Tecan/Illumina instrument and software combinations require the use of Tip Guides?](https://knowledge.illumina.com/microarray/tecan-iaps/microarray-tecan-iaps-faq-list/000009625.md)
- [Reference Material](https://knowledge.illumina.com/microarray/tecan-iaps/microarray-tecan-iaps-reference_material-list.md)
- [Tecan/IAPS with IAC Power Cycle Instructions](https://knowledge.illumina.com/microarray/tecan-iaps/microarray-tecan-iaps-reference_material-list/000002765.md)
- [Tecan](https://knowledge.illumina.com/microarray/tecan.md)
- [Reference Material](https://knowledge.illumina.com/microarray/tecan/microarray-tecan-reference_material-list.md)
- [Investigation of Log4j Vulnerability with Tecan and Hamilton Liquid Handlers](https://knowledge.illumina.com/microarray/tecan/microarray-tecan-reference_material-list/000006339.md)
- [\[FAQ\]](https://knowledge.illumina.com/microarray/tecan/faq.md)
- [iScan](https://knowledge.illumina.com/microarray/iscan.md)
- [FAQ](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-faq-list.md)
- [Can an iScan send notifications when it has completed scanning Infinium BeadChips?](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-faq-list/000007331.md)
- [How to determine the iScan Control Software version](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-faq-list/000005984.md)
- [What is the required iScan Control Software version and scan setting for Infinium EX BeadChips?](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-faq-list/000008679.md)
- [Troubleshooting](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-troubleshooting-list.md)
- [How to check for corrupt DMAPs before scanning BeadChips using the iScan](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-troubleshooting-list/000003861.md)
- [Reference Material](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-reference_material-list.md)
- [How the iScan determines beadchip type and which scan settings file to apply](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-reference_material-list/000009868.md)
- [How to set up Autoconvert in the iScan Control Software](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-reference_material-list/000001498.md)
- [Infinium Methylation Screening Array Manifest Column Headings](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-reference_material-list/000010058.md)
- [Power Cycle and Port Reset Sequence for one iScan with one AutoLoader](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-reference_material-list/000006785.md)
- [Power Cycle and Port Reset Sequence for two iScans and one AutoLoader](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-reference_material-list/000001502.md)
- [Using network file shares for data input and output in iScan Control Software (ICS)](https://knowledge.illumina.com/microarray/iscan/microarray-iscan-reference_material-list/000005590.md)
- [iSelect Custom Genotyping](https://knowledge.illumina.com/microarray/iselect-custom-genotyping.md)
- [Reference Material](https://knowledge.illumina.com/microarray/iselect-custom-genotyping/microarray-iselect-custom-genotyping-reference_material-list.md)
- [How to access custom array product files (manifests and product definition files) in MyIllumina](https://knowledge.illumina.com/microarray/iselect-custom-genotyping/microarray-iselect-custom-genotyping-reference_material-list/000001531.md)
- [General](https://knowledge.illumina.com/software/general.md)
- [Troubleshooting](https://knowledge.illumina.com/software/general/software-general-troubleshooting-list.md)
- [Creating custom reference genomes (non human) to use with DRAGEN apps on BaseSpace Sequence Hub](https://knowledge.illumina.com/software/general/software-general-troubleshooting-list/000007488.md)
- [DRAGEN reference differences for on instrument and standalone analysis](https://knowledge.illumina.com/software/general/software-general-troubleshooting-list/000009589.md)
- [How to demultiplex an incomplete run using bcl2fastq2 and BCL Convert](https://knowledge.illumina.com/software/general/software-general-troubleshooting-list/000003577.md)
- [How to generate FASTQs from an incomplete run in Local Run Manager](https://knowledge.illumina.com/software/general/software-general-troubleshooting-list/000001807.md)
- [How to troubleshoot a "None of the specified endpoints were reachable" error in Local Run Manager](https://knowledge.illumina.com/software/general/software-general-troubleshooting-list/000001217.md)
- [How to troubleshoot barcode collision and not enough hamming distance errors when demultiplexing runs with BCL Convert and bcl2fastq2](https://knowledge.illumina.com/software/general/software-general-troubleshooting-list/000002326.md)
- [Illumina Connected Analytics (ICA) kernel cannot connect in a Bench Workspaces](https://knowledge.illumina.com/software/general/software-general-troubleshooting-list/000007769.md)
- [Options for demultiplexing libraries with different index lengths in the same sequencing run](https://knowledge.illumina.com/software/general/software-general-troubleshooting-list/000005982.md)
- [Sample specific nucleotide error bias estimation filter and systematic noise filter in DRAGEN](https://knowledge.illumina.com/software/general/software-general-troubleshooting-list/000006989.md)
- [Troubleshooting demultiplexing issues for local DRAGEN analysis onboard the NextSeq 1000/2000](https://knowledge.illumina.com/software/general/software-general-troubleshooting-list/000003817.md)
- [Troubleshooting demultiplexing issues using BaseSpace Sequence Hub and bcl2fastq2 v2.17+](https://knowledge.illumina.com/software/general/software-general-troubleshooting-list/000002875.md)
- [Troubleshooting demultiplexing issues using Local Run Manager](https://knowledge.illumina.com/software/general/software-general-troubleshooting-list/000002862.md)
- [Troubleshooting demultiplexing issues using MiSeq Reporter](https://knowledge.illumina.com/software/general/software-general-troubleshooting-list/000002227.md)
- [Unlocking an account or resetting the password on Local Run Manager version 4](https://knowledge.illumina.com/software/general/software-general-troubleshooting-list/000009008.md)
- [FAQ](https://knowledge.illumina.com/software/general/software-general-faq-list.md)
- [Analysis FAQ for the TruPath Genome assay](https://knowledge.illumina.com/software/general/software-general-faq-list/000010170.md)
- [Can BaseSpace files be transferred directly to AWS (Amazon Web Services)?](https://knowledge.illumina.com/software/general/software-general-faq-list/000002832.md)
- [Can a run be started on the NovaSeq X/X Plus while an analysis is ongoing?](https://knowledge.illumina.com/software/general/software-general-faq-list/000008267.md)
- [Does TruSight Oncology 500 (TSO500) use a segmentation algorithm to determine the genomic coordinates of a copy number call?](https://knowledge.illumina.com/software/general/software-general-faq-list/000009436.md)
- [How is zygosity assigned for mitochondrial variant calls with DRAGEN?](https://knowledge.illumina.com/software/general/software-general-faq-list/000007537.md)
- [How to invite users to a Project in Illumina Connected Analytics v2](https://knowledge.illumina.com/software/general/software-general-faq-list/000007549.md)
- [How to requeue FASTQ Generation using BCL Convert on BaseSpace](https://knowledge.illumina.com/software/general/software-general-faq-list/000006472.md)
- [How to run the DRAGEN MSI Pipeline](https://knowledge.illumina.com/software/general/software-general-faq-list/000007508.md)
- [How to use the 'OverrideCycles' setting in the Run Planning User Interface](https://knowledge.illumina.com/software/general/software-general-faq-list/000005671.md)
- [Is there a certain number of times that users can requeue local analysis?](https://knowledge.illumina.com/software/general/software-general-faq-list/000007161.md)
- [MiSeq Reporter common questions](https://knowledge.illumina.com/software/general/software-general-faq-list/000002240.md)
- [When will FASTQ files be N masked in Local Run Manager, MiSeq Reporter, bcl2fastq, and BCL Convert?](https://knowledge.illumina.com/software/general/software-general-faq-list/000003633.md)
- [Why are underscores in sample names changed to dashes in the FASTQ file names?](https://knowledge.illumina.com/software/general/software-general-faq-list/000003636.md)
- [Reference Material](https://knowledge.illumina.com/software/general/software-general-reference_material-list.md)
- [BCL Convert and index UMIs How to demultiplex samples and output a UMI FASTQ](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000007337.md)
- [BaseSpace FASTQ Processing Tools for Data Analysis Support Webinar Video](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000008085.md)
- [Creating a custom genome for NovaSeq X Series](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000009590.md)
- [DRAGEN Enrichment App in BaseSpace](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000003686.md)
- [DRAGEN Metagenomics Pipeline in BaseSpace general information](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000003688.md)
- [FASTQ文件解读](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000007412.md)
- [Generating checksums for a file](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000008482.md)
- [Guidelines for reverse complementing i5 sequences for demultiplexing](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000001800.md)
- [How to Add a User to Illumina Connected Multiomics Domain and Workgroup](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000010147.md)
- [How to Specify Adapters for Trimming in Local Run Manager](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000003678.md)
- [How to add a Custom Reference Genome in Local Run Manager](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000002685.md)
- [How to avoid Ns in small RNA or short reads when running BCL Convert](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000009157.md)
- [How to concatenate the FASTQ files from different lanes](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000002035.md)
- [How to connect remotely to Local Run Manager v4 on instrument](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000002323.md)
- [How to download only FASTQs from a BaseSpace project using BaseSpace CLI](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000003376.md)
- [How to edit a sample sheet and requeue an analysis in BaseSpace Sequence Hub](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000001321.md)
- [How to generate FASTQ files for index reads in MiSeq Reporter](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000001326.md)
- [How to generate FASTQ files from an incomplete run in MiSeq Reporter](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000001325.md)
- [How to realign a CRAM file to a new reference with DRAGEN](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000007021.md)
- [How to requeue analysis of a run with MiSeq Reporter](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000001782.md)
- [How to share BaseSpace Sequence Hub sequencing data from enterprise domain to public domain](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000001666.md)
- [How to unlock BioSamples in BaseSpace using BaseSpace Command Line Interface (CLI)](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000005845.md)
- [How to use Exome 2.5 Panel of Normals reference for germline deletion/duplication analysis](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000007918.md)
- [How to use a custom library prep kit in Local Run Manager v2](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000001317.md)
- [How to use custom library prep and index kits with Local Run Manager v3 and v4](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000005897.md)
- [Illumina DRAGEN Bio IT Platform What is new with version 3.10 updates Support Webinar Video](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000008073.md)
- [Illumina DRAGEN Bio IT Platform What is new with version 3.9 updates Support Webinar Video](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000008075.md)
- [Illumina DRAGEN Bio IT Platform Ultra Rapid Analysis of Next Generation Data Support Webinar Video](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000008091.md)
- [Illumina DRAGEN Bio IT Platform What is new with version 3.5 updates Support Webinar Video](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000008088.md)
- [Illumina DRAGEN Bio IT Platform What is new with version 3.6 updates Support Webinar Video](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000008083.md)
- [Illumina DRAGEN Bio IT Platform What is new with version 3.7 Support Webinar Video](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000008086.md)
- [Illumina DRAGEN Bio IT Platform What is new with version 3.8 updates Support Webinar Video](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000008084.md)
- [Illumina DRAGEN v4.0 Unlock the Full Potential of Genomics Support Webinar Video](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000008072.md)
- [Information on leading r for UMIs when demultiplexing NextSeq 1000/2000 or NovaSeq X series data with BCL Convert](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000007945.md)
- [Instructions for using BaseSpace CLI on Windows to upload runs](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000007950.md)
- [Investigation of Log4j Vulnerability status for Illumina off instrument software products](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000006344.md)
- [Investigation of Log4j Vulnerability with the Illumina DRAGEN Bio IT Platform](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000006340.md)
- [Investigation of Log4j Vulnerability](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000006335.md)
- [Local Run Manager How to create FASTQ files for index reads](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000001323.md)
- [Maximum number of cycles for index reads on the NovaSeq X Series](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000008417.md)
- [Metagenomic Sequencing Introduction to Data Analysis Support Webinar Video](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000007979.md)
- [NextSeq 1000/2000 Introduction to Analysis with DRAGEN Support Webinar Video](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000008076.md)
- [Sequencing Data Analysis Introduction to Key Concepts Support Webinar Video](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000007978.md)
- [Trimming T overhang options for Illumina Stranded mRNA and Illumina Stranded Total RNA workflows](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000003227.md)
- [TruSight Oncology 500 (TSO500) High Throughput Sample Sheet templates link](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000003524.md)
- [TruSight Oncology 500 Assays and Analysis Options](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000003812.md)
- [Upgrading from bcl2fastq to BCL Convert](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000003710.md)
- [Using an N wildcard in index sequences in different Illumina FASTQ generation software](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000003560.md)
- [Which orientation are the indexes in Top\_Unknown\_Barcodes output from BclConvert?](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000005078.md)
- [Why is allowing mismatches when demultiplexing desirable?](https://knowledge.illumina.com/software/general/software-general-reference_material-list/000007484.md)
- [3rd Party Software](https://knowledge.illumina.com/software/3rd-party-software.md)
- [Reference Material](https://knowledge.illumina.com/software/3rd-party-software/software-3rd-party-software-reference_material-list.md)
- [How to upload files to Illumina Kiteworks using command line tools](https://knowledge.illumina.com/software/3rd-party-software/software-3rd-party-software-reference_material-list/000009128.md)
- [FAQ](https://knowledge.illumina.com/software/3rd-party-software/software-3rd-party-software-faq-list.md)
- [Information Regarding OpenSSL v3 Vulnerability](https://knowledge.illumina.com/software/3rd-party-software/software-3rd-party-software-faq-list/000007171.md)
- [BaseSpace CLI](https://knowledge.illumina.com/software/basespace-cli.md)
- [Troubleshooting](https://knowledge.illumina.com/software/basespace-cli/software-basespace-cli-troubleshooting-list.md)
- [BaseSpace Command Line Interface upload failure with request signature error](https://knowledge.illumina.com/software/basespace-cli/software-basespace-cli-troubleshooting-list/000007037.md)
- [Resolving Basespace CLI analysis launch error Resource FileSummary doesn't exist](https://knowledge.illumina.com/software/basespace-cli/software-basespace-cli-troubleshooting-list/000010173.md)
- [Troubleshooting "Permission denied" error when attempting to run BaseSpace CLI on Linux and Mac OS](https://knowledge.illumina.com/software/basespace-cli/software-basespace-cli-troubleshooting-list/000003380.md)
- [Reference Material](https://knowledge.illumina.com/software/basespace-cli/software-basespace-cli-reference_material-list.md)
- [Bulk Deletion of Runs and Projects Using BaseSpace CLI with Windows PowerShell](https://knowledge.illumina.com/software/basespace-cli/software-basespace-cli-reference_material-list/000010078.md)
- [How to authenticate BaseSpace CLI to another region or Enterprise domain](https://knowledge.illumina.com/software/basespace-cli/software-basespace-cli-reference_material-list/000005560.md)
- [How to authenticate BaseSpace CLI to workgroup](https://knowledge.illumina.com/software/basespace-cli/software-basespace-cli-reference_material-list/000008347.md)
- [How to upload a run to BaseSpace using BaseSpace Command Line Interface (CLI)](https://knowledge.illumina.com/software/basespace-cli/software-basespace-cli-reference_material-list/000003298.md)
- [How to upload and download FASTQ files to BaseSpace with BaseSpace CLI](https://knowledge.illumina.com/software/basespace-cli/software-basespace-cli-reference_material-list/000001138.md)
- [Uploading Runs BaseSpace Command Line Interface (CLI) Video](https://knowledge.illumina.com/software/basespace-cli/software-basespace-cli-reference_material-list/000005857.md)
- [Uploading and downloading FASTQ files with BaseSpace CLI Video](https://knowledge.illumina.com/software/basespace-cli/software-basespace-cli-reference_material-list/000005860.md)
- [BaseSpace Sequence Hub](https://knowledge.illumina.com/software/basespace-sequence-hub.md)
- [Reference Material](https://knowledge.illumina.com/software/basespace-sequence-hub/software-basespace-sequence-hub-reference_material-list.md)
- [How to accept BaseSpace transfer ownership requests in a workgroup context](https://knowledge.illumina.com/software/basespace-sequence-hub/software-basespace-sequence-hub-reference_material-list/000009086.md)
- [How to change ownership of a BaseSpace Professional Workgroup or Enterprise Domain](https://knowledge.illumina.com/software/basespace-sequence-hub/software-basespace-sequence-hub-reference_material-list/000007942.md)
- [How to install the BaseSpace Sequence Hub Downloader on Mac OS](https://knowledge.illumina.com/software/basespace-sequence-hub/software-basespace-sequence-hub-reference_material-list/000003049.md)
- [How to share BaseSpace sequencing runs and project data using 'Get Link' option](https://knowledge.illumina.com/software/basespace-sequence-hub/software-basespace-sequence-hub-reference_material-list/000001597.md)
- [How to transfer data in BaseSpace from Public Domain to Enterprise Domain](https://knowledge.illumina.com/software/basespace-sequence-hub/software-basespace-sequence-hub-reference_material-list/000003654.md)
- [How to unlock a Biosample in BaseSpace that is locked due to Biosample Data Aggregation](https://knowledge.illumina.com/software/basespace-sequence-hub/software-basespace-sequence-hub-reference_material-list/000003653.md)
- [Transferring data between a personal account and a Professional workgroup in BaseSpace Sequence Hub](https://knowledge.illumina.com/software/basespace-sequence-hub/software-basespace-sequence-hub-reference_material-list/000001798.md)
- [What is restricted when a BaseSpace Basic user exceeds 1TB storage limit](https://knowledge.illumina.com/software/basespace-sequence-hub/software-basespace-sequence-hub-reference_material-list/000005662.md)
- [FAQ](https://knowledge.illumina.com/software/basespace-sequence-hub/software-basespace-sequence-hub-faq-list.md)
- [What are the different BaseSpace Account Types?](https://knowledge.illumina.com/software/basespace-sequence-hub/software-basespace-sequence-hub-faq-list/000002846.md)
- [What is the BaseSpace data deletion policy?](https://knowledge.illumina.com/software/basespace-sequence-hub/software-basespace-sequence-hub-faq-list/000002847.md)
- [Troubleshooting](https://knowledge.illumina.com/software/basespace-sequence-hub/software-basespace-sequence-hub-troubleshooting-list.md)
- [How to demultiplex mixed libraries on the same lane in BaseSpace Sequence Hub](https://knowledge.illumina.com/software/basespace-sequence-hub/software-basespace-sequence-hub-troubleshooting-list/000002853.md)
- [How to recover a BaseSpace password reset email](https://knowledge.illumina.com/software/basespace-sequence-hub/software-basespace-sequence-hub-troubleshooting-list/000003658.md)
- [Requirements for uploading FASTQ Files to BaseSpace via web interface](https://knowledge.illumina.com/software/basespace-sequence-hub/software-basespace-sequence-hub-troubleshooting-list/000001313.md)
- [What to do if a BaseSpace analysis is stuck or stalled running](https://knowledge.illumina.com/software/basespace-sequence-hub/software-basespace-sequence-hub-troubleshooting-list/000007380.md)
- [BclConvert bcl2fastq](https://knowledge.illumina.com/software/bclconvert-bcl2fastq.md)
- [Reference Material](https://knowledge.illumina.com/software/bclconvert-bcl2fastq/software-bclconvert-bcl2fastq-reference_material-list.md)
- [How to set OverrideCycles values for variable index sequence lengths on the NovaSeq X/X Plus](https://knowledge.illumina.com/software/bclconvert-bcl2fastq/software-bclconvert-bcl2fastq-reference_material-list/000008935.md)
- [Troubleshooting](https://knowledge.illumina.com/software/bclconvert-bcl2fastq/software-bclconvert-bcl2fastq-troubleshooting-list.md)
- [Troubleshooting BCLConvert showing Read 1 Cycles 0 and QC Status Failed](https://knowledge.illumina.com/software/bclconvert-bcl2fastq/software-bclconvert-bcl2fastq-troubleshooting-list/000009654.md)
- [Cloud Software](https://knowledge.illumina.com/software/cloud-software.md)
- [Reference Material](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list.md)
- [BaseSpace Command Line Tools for Basic Analysis Part I Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008080.md)
- [BaseSpace Command Line Tools for Basic Analysis Part II Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008082.md)
- [BaseSpace Data Model Explained](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000007009.md)
- [BaseSpace Informatics Suite Intro to Cohort Analyzer and Correlation Engine Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008089.md)
- [BaseSpace Sequence Hub Introduction and Analysis Overview Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008087.md)
- [BaseSpace Sequence Hub informational resources](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000002876.md)
- [Enrichment Data Analysis Introduction Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008090.md)
- [How to Requeue Analysis for a NextSeq 1000/2000 run using BaseSpace BCL Convert Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000006955.md)
- [How to Requeue a Run using BaseSpace Sequence Hub Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000006956.md)
- [How to configure Single Sign On (SSO) for an Illumina Enterprise domain using Entra ID](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000005972.md)
- [How to configure Single Sign On (SSO) for an Illumina Enterprise domain using Okta](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000006210.md)
- [How to delete a variant with API in Emedgene Curate](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000009725.md)
- [How to download FASTQs from specific lanes using Basespace CLI](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000006973.md)
- [How to download specific file types when downloading runs from BaseSpace using BaseSpace CLI](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000003154.md)
- [How to find the Demultiplexing Summary and SampleSheetUsed in BaseSpace?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000003652.md)
- [How to get started with BaseSpace Command Line Interface (CLI) Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000005593.md)
- [How to import files into a BaseSpace Project using the web Interface](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000003651.md)
- [How to invite users to an Enterprise domain workgroup, via a collaborative Enterprise domain account](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000005878.md)
- [How to launch any app in BaseSpace using BaseSpace Command Line Interface (CLI)](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000007759.md)
- [How to list BaseSpace entities using BaseSpace CLI](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000003682.md)
- [How to manage status.illumina.com subscriptions](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000009049.md)
- [How to set the default location for uploaded runs to BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000001847.md)
- [How to use the Resources page to add custom reference files for Run Planning for NovaSeq X/X Plus runs](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008500.md)
- [Investigation of Log4j Vulnerability with BaseSpace Sequence Hub (BSSH) Cloud](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000006337.md)
- [Investigation of Log4j Vulnerability with Illumina Connected Analytics (ICA)](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000006343.md)
- [Panel of Normals TruSight Hereditary Cancer Panel datasets for copy number variations in BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000007929.md)
- [RNA Sequencing Part III Introduction to Analysis Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008079.md)
- [Reference genome and target regions BED file for the DRAGEN PopGen app](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000007889.md)
- [TruSight Oncology 500 version 2 Analysis Overview Support Webinar Video](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000008077.md)
- [Which BaseSpace Subscription is needed to process Illumina 3' Single Cell RNA Samples](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000009794.md)
- [Which BaseSpace apps and features use Illumina Connected Analytics](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000009045.md)
- [使用BaseSpace基因云计算平台和bcl2fastq2 2.17以及以上版本软件时，如何排查拆分异常情况](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-reference_material-list/000007134.md)
- [Troubleshooting](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list.md)
- [BaseSpace and Proactive outage resource page](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000007381.md)
- [DRAGEN Imputation App v 4.0.3 on BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000007061.md)
- [Details about DRAGEN Metagenomics Kraken2 Database](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000008424.md)
- [Emedgene troubleshooting information request form](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000008955.md)
- [How to download files needed for Sequencing Analysis Viewer from BaseSpace using BaseSpace CLI](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000006942.md)
- [Troubleshooting DRAGEN analysis error UMI processing is enabled but QNAME does not have UMI section](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000008107.md)
- [Troubleshooting DRAGEN single cell RNA App UMI error in BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000009852.md)
- [Troubleshooting Illumina Service Connector not connected for Window computer](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000008566.md)
- [Troubleshooting emptying the trash in BaseSpace Sequence Hub](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000007563.md)
- [Why an appsession API call may only returning a subset of datasets from BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-troubleshooting-list/000007567.md)
- [FAQ](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list.md)
- [Are the files for SAV available from BaseSpace if the run was performed with only Run Monitoring?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000007165.md)
- [Different coverage reports from the DRAGEN Enrichment analysis](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000006992.md)
- [How does BaseSpace Command Line Interface (CLI) check the integrity of file uploads?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000008437.md)
- [How to access Illumina Admin Console for Illumina Connected Software](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000005963.md)
- [How to archive and retrieve data in BaseSpace using BaseSpace Command Line Interface (CLI) commands?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000005447.md)
- [How to generate Audit Logs in BaseSpace Sequence Hub?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000005448.md)
- [How to run the DRAGEN PopGen app on BaseSpace?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000007517.md)
- [How to transfer runs/datasets between different regional servers using BaseSpace CLI](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000005682.md)
- [How to use an API call to download FastQ files from BaseSpace](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000007506.md)
- [How to view files from Illumina Connected Analytics in Integrative Genomics Viewer](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000007465.md)
- [Is there a limit to the number of files that can be stored within an ICA project?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000009959.md)
- [Running DRAGEN Amplicon 3.10.4 on BaseSpace on a single sample type with a hg38 reference](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000007870.md)
- [What is the process for renewing a BaseSpace Professional Workgroup account?](https://knowledge.illumina.com/software/cloud-software/software-cloud-software-faq-list/000006724.md)
- [Control Software](https://knowledge.illumina.com/software/control-software.md)
- [Troubleshooting](https://knowledge.illumina.com/software/control-software/software-control-software-troubleshooting-list.md)
- [Troubleshooting "the owner of workgroup does not have access to the workgroup" message in BaseSpace](https://knowledge.illumina.com/software/control-software/software-control-software-troubleshooting-list/000009510.md)
- [DRAGEN Server](https://knowledge.illumina.com/software/dragen-server.md)
- [Reference Material](https://knowledge.illumina.com/software/dragen-server/software-dragen-server-reference_material-list.md)
- [DRAGEN Bio IT Platform v4 Oracle 8 upgrade instructions](https://knowledge.illumina.com/software/dragen-server/software-dragen-server-reference_material-list/000007439.md)
- [DRAGEN](https://knowledge.illumina.com/software/dragen.md)
- [FAQ](https://knowledge.illumina.com/software/dragen/software-dragen-faq-list.md)
- [Analysis frequently asked questions for the Illumina miRNA prep kit](https://knowledge.illumina.com/software/dragen/software-dragen-faq-list/000009896.md)
- [Analysis launch FAQ for the Illumina 5 Base WGS and Enrichment kits](https://knowledge.illumina.com/software/dragen/software-dragen-faq-list/000009950.md)
- [Analysis options FAQ for Illumina Rapid RNA Kits](https://knowledge.illumina.com/software/dragen/software-dragen-faq-list/000010217.md)
- [Analysis pipeline and output FAQ for the Illumina 5 Base WGS and Enrichment kits](https://knowledge.illumina.com/software/dragen/software-dragen-faq-list/000009951.md)
- [Can the DRAGEN system handle concurrent users?](https://knowledge.illumina.com/software/dragen/software-dragen-faq-list/000006027.md)
- [DRAGEN Analysis Pipelines FAQ for Illumina Rapid RNA Kits](https://knowledge.illumina.com/software/dragen/software-dragen-faq-list/000010218.md)
- [Does the DRAGEN system process multiple samples in parallel?](https://knowledge.illumina.com/software/dragen/software-dragen-faq-list/000006026.md)
- [How to enable DRAGEN to process multiple FASTQ files for the same subject?](https://knowledge.illumina.com/software/dragen/software-dragen-faq-list/000006031.md)
- [Variant and Methylation calling FAQ for the Illumina 5 Base WGS and Enrichment kits](https://knowledge.illumina.com/software/dragen/software-dragen-faq-list/000009952.md)
- [Reference Material](https://knowledge.illumina.com/software/dragen/software-dragen-reference_material-list.md)
- [Compatible callers for non human references in the DRAGEN Germline App](https://knowledge.illumina.com/software/dragen/software-dragen-reference_material-list/000009848.md)
- [DRAGEN Bio IT Platform v3 Oracle 8 upgrade instructions](https://knowledge.illumina.com/software/dragen/software-dragen-reference_material-list/000007438.md)
- [How to build a Custom Reference Hashtable for BaseSpace DRAGEN Single Cell RNA Application](https://knowledge.illumina.com/software/dragen/software-dragen-reference_material-list/000009925.md)
- [How to connect to the Java SOL on DRAGEN v3 Hardware](https://knowledge.illumina.com/software/dragen/software-dragen-reference_material-list/000009858.md)
- [Troubleshooting](https://knowledge.illumina.com/software/dragen/software-dragen-troubleshooting-list.md)
- [Instructions to back up DRAGEN license files when upgrading the operating system on a DRAGEN server](https://knowledge.illumina.com/software/dragen/software-dragen-troubleshooting-list/000008620.md)
- [General Library Prep](https://knowledge.illumina.com/software/general-library-prep.md)
- [Reference Material](https://knowledge.illumina.com/software/general-library-prep/software-general-library-prep-reference_material-list.md)
- [Adapter trimming Why are adapter sequences trimmed from only the 3' ends of reads](https://knowledge.illumina.com/software/general-library-prep/software-general-library-prep-reference_material-list/000002905.md)
- [Illumina Connected Analytics (ICA)](https://knowledge.illumina.com/software/illumina-connected-analytics-ica.md)
- [Reference Material](https://knowledge.illumina.com/software/illumina-connected-analytics-ica/software-illumina-connected-analytics-_op_ica_cp_-reference_material-list.md)
- [How to install an Illumina Connected Analytics service connector on Linux Video](https://knowledge.illumina.com/software/illumina-connected-analytics-ica/software-illumina-connected-analytics-_op_ica_cp_-reference_material-list/000006954.md)
- [Where data copied from BaseSpace to ICA are stored on ICA](https://knowledge.illumina.com/software/illumina-connected-analytics-ica/software-illumina-connected-analytics-_op_ica_cp_-reference_material-list/000008546.md)
- [Illumina Connected Multiomics (ICM)](https://knowledge.illumina.com/software/illumina-connected-multiomics-icm.md)
- [Reference Material](https://knowledge.illumina.com/software/illumina-connected-multiomics-icm/software-illumina-connected-multiomics-_op_icm_cp_-reference_material-list.md)
- [How to Access and Share Illumina Connected Multiomics (ICM) Analysis Logs](https://knowledge.illumina.com/software/illumina-connected-multiomics-icm/software-illumina-connected-multiomics-_op_icm_cp_-reference_material-list/000010048.md)
- [How to import Demo Data into Illumina Connected Multiomics](https://knowledge.illumina.com/software/illumina-connected-multiomics-icm/software-illumina-connected-multiomics-_op_icm_cp_-reference_material-list/000010107.md)
- [How to optimize ICM (Illumina Connected Multiomics) Data Viewer Performance](https://knowledge.illumina.com/software/illumina-connected-multiomics-icm/software-illumina-connected-multiomics-_op_icm_cp_-reference_material-list/000010030.md)
- [Importing raw Single Cell RNA Data into Illumina Connected Multiomics](https://knowledge.illumina.com/software/illumina-connected-multiomics-icm/software-illumina-connected-multiomics-_op_icm_cp_-reference_material-list/000010024.md)
- [MiSeq RUO](https://knowledge.illumina.com/software/miseq-ruo.md)
- [Reference Material](https://knowledge.illumina.com/software/miseq-ruo/software-miseq-ruo-reference_material-list.md)
- [Allowed characters for Run Names and Sample IDs in Local Run Manager v3](https://knowledge.illumina.com/software/miseq-ruo/software-miseq-ruo-reference_material-list/000005750.md)
- [NextSeq 500/550](https://knowledge.illumina.com/software/nextseq-500-550.md)
- [Troubleshooting](https://knowledge.illumina.com/software/nextseq-500-550/software-nextseq-500-550-troubleshooting-list.md)
- [How to troubleshoot Local Run Manager (LRM) analysis module not available at run start on NextSeq 500/550](https://knowledge.illumina.com/software/nextseq-500-550/software-nextseq-500-550-troubleshooting-list/000001904.md)
- [On Instrument Analysis Software](https://knowledge.illumina.com/software/on-instrument-analysis-software.md)
- [Reference Material](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list.md)
- [Comparison of MiSeq Reporter and Local Run Manager analysis workflows](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000005974.md)
- [Local Run Manager v3 with MiSeq Control Software v4 Introduction Support Webinar Video](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000008078.md)
- [Local Run Manager 如何利用不完整的测序结果生成FASTQ文件](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000007112.md)
- [Using Illumina Experiment Manager (IEM) to Create a Sample Sheet for Illumina Libraries Video](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000005856.md)
- [如何使MiSeq Reporter生成Index Reads 的FASTQ文件](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000007352.md)
- [如何使用MiSeq Reporter从未完成的run中创建出FASTQ文件](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000007401.md)
- [如何使用MiSeq Reporter重新分析一个run？](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000007342.md)
- [如何在Local Run Manage中进行重分析（Requeue）及导入运行数据（Import）再分析](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000007141.md)
- [如何将桌面测序仪和Local Run Manager与网络存储位置进行连接](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-reference_material-list/000007367.md)
- [FAQ](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-faq-list.md)
- [Can the MiSeq System generate FASTQ files?](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-faq-list/000002606.md)
- [Troubleshooting](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-troubleshooting-list.md)
- [Creating a custom DRAGEN reference genome for NextSeq1000/2000 analysis](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-troubleshooting-list/000007055.md)
- [How to remove a BCL file from analysis in MiSeq Reporter or Local Run Manager](https://knowledge.illumina.com/software/on-instrument-analysis-software/software-on-instrument-analysis-software-troubleshooting-list/000002415.md)
- [On Premises Software](https://knowledge.illumina.com/software/on-premises-software.md)
- [Troubleshooting](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-troubleshooting-list.md)
- [Cannot specify ' with failed reads' with cbcl input data." error in bcl2fastq2](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-troubleshooting-list/000003571.md)
- [Considerations when using DRAGEN TruSight Oncology 500 Solid v2.1 Sample Sheet](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-troubleshooting-list/000007419.md)
- [DRAGEN TSO500 ctDNA v2.1.1 install fails or breaks existing DRAGEN TSO500 installation](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-troubleshooting-list/000008609.md)
- [DRAGEN installation failed due to lack of disk space in root volume](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-troubleshooting-list/000008926.md)
- [Download links for DRAGEN Reference genome FASTA files](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-troubleshooting-list/000007409.md)
- [Guidance regarding light seen from the DRAGEN v4 power supply when an unstable power cord is used](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-troubleshooting-list/000009610.md)
- [Reference Material](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-reference_material-list.md)
- [Bcl2Fastq v2+Introduction Support Webinar Video](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-reference_material-list/000008093.md)
- [Considerations for using a DRAGEN Server with an automated job scheduler](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-reference_material-list/000001821.md)
- [DRAGEN TruSight Oncology 500 (TSO500) co install options](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-reference_material-list/000009369.md)
- [How to create a Project connector in Illumina Connected Analytics Video](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-reference_material-list/000006953.md)
- [How to demultiplex a run without using either the i7 index or the i5 index using bcl2fastq2](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-reference_material-list/000003145.md)
- [How to install an Illumina Connected Analytics service connector on Windows Video](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-reference_material-list/000006952.md)
- [How to install an Illumina Connected Analytics service connector on macOS Video](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-reference_material-list/000007123.md)
- [How to parse the Counts sparse matrix file output by the DRAGEN scRNA and scATAC pipelines](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-reference_material-list/000007911.md)
- [How to update the DRAGEN BIOS version to reduce v4 server fan noise](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-reference_material-list/000009378.md)
- [Information on BCL Convert software releases](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-reference_material-list/000009158.md)
- [Investigation of Log4j Vulnerability with Emedgene](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-reference_material-list/000006338.md)
- [Recommendation to abort ongoing DRAGEN analysis](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-reference_material-list/000008557.md)
- [Running DRAGEN analyses with ORA files as input](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-reference_material-list/000007955.md)
- [FAQ](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-faq-list.md)
- [Can a 10 Gbps connection support data analysis between the DRAGEN server and storage server?](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-faq-list/000006042.md)
- [How to calculate the DRAGEN license quota](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-faq-list/000005077.md)
- [How to cold boot or power cycle a DRAGEN server?](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-faq-list/000005673.md)
- [How to find the FPGA serial number on a DRAGEN server?](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-faq-list/000009166.md)
- [How to generate FASTQs for a run without specifying indexes using BCL Convert](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-faq-list/000007493.md)
- [How to output both gVCF and VCF in a single DRAGEN run?](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-faq-list/000007869.md)
- [How to prevent Ns in small RNA reads or short reads after running bcl2fastq2](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-faq-list/000003147.md)
- [How to use a custom cross contamination VCF file with DRAGEN](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-faq-list/000007495.md)
- [Visualizing the DRAGEN Evidence BAM in Integrative Genomics Viewer (IGV)](https://knowledge.illumina.com/software/on-premises-software/software-on-premises-software-faq-list/000007836.md)
- [Other Illumina Software](https://knowledge.illumina.com/software/other-illumina-software.md)
- [Reference Material](https://knowledge.illumina.com/software/other-illumina-software/software-other-illumina-software-reference_material-list.md)
- [How to add a custom library prep kit to Illumina Experiment Manager](https://knowledge.illumina.com/software/other-illumina-software/software-other-illumina-software-reference_material-list/000002346.md)
- [Partek Flow](https://knowledge.illumina.com/software/partek-flow.md)
- [Reference Material](https://knowledge.illumina.com/software/partek-flow/software-partek-flow-reference_material-list.md)
- [How to add Illumina support as collaborators to projects in Partek Flow](https://knowledge.illumina.com/software/partek-flow/software-partek-flow-reference_material-list/000009718.md)
- [TSO500 TST170](https://knowledge.illumina.com/software/tso500-tst170.md)
- [Reference Material](https://knowledge.illumina.com/software/tso500-tst170/software-tso500-tst170-reference_material-list.md)
- [Information on controls used in TruSight Oncology 500 demo datasets](https://knowledge.illumina.com/software/tso500-tst170/software-tso500-tst170-reference_material-list/000010057.md)
- [bcl2fastq](https://knowledge.illumina.com/software/bcl2fastq.md)
- [Reference Material](https://knowledge.illumina.com/software/bcl2fastq/software-bcl2fastq-reference_material-list.md)
- [Labeled components of a v1 sample sheet](https://knowledge.illumina.com/software/bcl2fastq/software-bcl2fastq-reference_material-list/000002204.md)


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