> For the complete documentation index, see [llms.txt](https://knowledge.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://knowledge.illumina.com/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list.md).

# Reference Material

Instrumentation > MiSeq RUO > Reference Material

* [Best practices for maintaining the computer on a MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000006708.md)
* [Chemistry and imaging on MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000003757.md)
* [Consumable Part Numbers for the MiSeq and Total SBS cycles available](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000005842.md)
* [Custom sequencing primers on the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000002414.md)
* [Enabling run storage and analysis in BaseSpace for MiSeq runs](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000003618.md)
* [File paths for the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000001678.md)
* [Frequently asked questions about upgrading to MiSeq Control Software v4.0](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000005752.md)
* [How to Power Cycle the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000001894.md)
* [How to check network settings on the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000002383.md)
* [How to clean the MiSeq flow cell holder](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000003500.md)
* [How to generate RFID bypass codes for the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000001528.md)
* [How to generate an RFID bypass code in MyIllumina Video](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000005859.md)
* [How to stop and restart RTA on the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000002031.md)
* [Recommendations for optimal cluster density and PhiX loading concentrations on the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000001676.md)
* [Specifications for the MiSeq](/instrumentation/miseq-ruo/instrumentation-miseq-ruo-reference_material-list/000001670.md)


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